BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19510.1
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1 1360 0.0
Ahg940697 jgi|Araly1|940697|scaffold_601241.1 560 6e-159
> Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1
Length=936
Score = 1360 bits (736), Expect = 0.0
Identities = 860/921 (93%), Gaps = 4/921 (0%)
Strand=Plus/Plus
Query 64 AGTCTCTCTGATCTCTCTACCTCCCTCACACCCTAAAACTCAGCAACAATGGCCGTTACC 123
|||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 18 AGTCTCGCTGATCTCTCTCCCTCCCTCACACCCTAAAAAGCAGCAACAATGGCCGTTACC 77
Query 124 TTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGAGGAGCACCTCGCCGGAAAA 137
Query 184 ACCTACATCTCCGGAGATCAATTGTCTGTGGATGATGTCAAGGTTTACGCTGCCGTTCCA 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 138 ACCTACATCTCCGGAGATCAATTGTCTGTGGATGATGTTAAGGTTTACGCTGCTGTTCCA 197
Query 244 GTGAAACCCAGCGATGCCTTCCCCAATGCTAGCAAGTGGTACGAGTCCGTGGCTTCCCAA 303
||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||
Sbjct 198 GTGAAACCCAGCGATGCTTTCCCTAATGCTAGCAAGTGGTACCAGTGTGTGGCTTCCCAT 257
Query 304 CTTGCTAAAAGTTTCCCTGGAAAGGCCGTTGGAGTACAATTCGGTGGCTctgctgctgct 363
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 258 CTTGCTAAAAGTTTCCCTGGAAAGGCCGTTGGAGTGCAAATCGGTGGCTCTGCTGCTGCT 317
Query 364 gctccagctgttgaagctgaggcacctgcagctgcagctgatgatgatgatgaCATGGAT 423
|||||||||| || |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 318 CCTCCAGCTGTGGAGGCTGAGGCACCTACAGCTGCAGCTGATGATGATGATGACATTGAT 377
Query 424 CTCTTTGGTGACGAGACCGAAGAAGAAAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAG 483
|| |||||||| ||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 378 CTGTTTGGTGATGAGACTGAGGAGGAAAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAG 437
Query 484 AAGGACACCAAGAAGCCTAAAGAGAGTGGAAAGTCTTCTGTGCTCATGGATGTTAAGCCA 543
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 438 AAGGACACCAAGAAGCCTAAAGAGAGTGGAAAGTCCTCTGTGCTTATGGATGTTAAGCCA 497
Query 544 TGGGATGATGAAACCGACATGAAGAAACTGGAAGAGGCTGTTCGTGGTGTTGAGAT-GCC 602
||||||||||| |||||||||||||||||||||| ||||||||||| |||||| || |||
Sbjct 498 TGGGATGATGAGACCGACATGAAGAAACTGGAAGCGGCTGTTCGTGCTGTTGA-ATTGCC 556
Query 603 TGGTCTTTTCTGGGGAGCCTCAAAACTTGTACCAGTTGGTTATGGGATCAAGAAACTCAC 662
|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 557 CGGTCTTTTATGGGGAGCTTCAAAACTTGTACCAGTTGGTTACGGGATCAAGAAACTCAC 616
Query 663 AATTATGTTCACGATTGTTGATGACCTCGTGTCCCCGGACAACCTCATTGAAGACTTCCT 722
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 617 GATTATGCTCACGATTGTTGATGACCTCGTGTCCCCAGACAACCTCATTGAAGACTTTCT 676
Query 723 CACCTCAGAGCCTAACAACGAGTACATCCAGAGTTGTGACATTGTCGCTTTCAACAAGAT 782
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 677 CACCTCAGAGCCTAACAACGAGTACATCCAGAGTTGTGACATTGTCGCATTCAACAAGAT 736
Query 783 TTAGAGACTTCAAATTTCTCCTTACCGAAACATATCTGAATTTCAAGTTTTGTTTTCGTT 842
|||||||||||||| ||||||||| |||||||| || ||||||||||||||||||||
Sbjct 737 TTAGAGACTTCAAACCTCTCCTTACAAAAACATATTTGGTTTTCAAGTTTTGTTTTCGTT 796
Query 843 TGTGTTGTTTACCGAAATGTTTCTTTCCTAGTTGCAAGACCGCTTTCATGTTACAATAAC 902
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 797 TGTGTTGTTTACCGAGATGTTTCTTTTCTAGTTGCAAGACCTCTTTCATGTTACAATAAC 856
Query 903 ACTAAATTTTCAATGGTTACTATTCCGTTGCATCATTGTTAAGAAAC-ATTTAGATACTT 961
|||||||| |||||| || |||||||||||||| ||||||||||| | | |||| |||||
Sbjct 857 ACTAAATTATCAATGCTTTCTATTCCGTTGCATTATTGTTAAGAA-CTACTTAGGTACTT 915
Query 962 TGACAAATTCTCTATTACTTC 982
||| ||||| |||| ||||||
Sbjct 916 TGAAAAATTTTCTACTACTTC 936
> Ahg940697 jgi|Araly1|940697|scaffold_601241.1
Length=736
Score = 560 bits (303), Expect = 6e-159
Identities = 593/726 (82%), Gaps = 47/726 (6%)
Strand=Plus/Plus
Query 105 AGCAACAATGGCCGTTACCTTTTCAGATCTACACACAGAGGAGGGTGTCAAATCCGTGGA 164
|||| ||||||| ||||| ||||| ||||| ||||||||| | ||| ||||| || | ||
Sbjct 14 AGCATCAATGGCGGTTACATTTTCTGATCTGCACACAGAGCAAGGTCTCAAAACCCTCGA 73
Query 165 GGAGCACCTCGCCGGAAAAACCTACATCTCCGGAGATCA-ATTGTC-TGTGGATGATGTC 222
||| || |||||||||||||||||||||||||| ||||| || || | ||||||||||
Sbjct 74 GGAACATCTCGCCGGAAAAACCTACATCTCCGGCGATCAGCTT-TCAT-TGGATGATGTG 131
Query 223 AAGGTTTACGCTGCCGTTCCAGT-GA-AACCCA-GCGATGCCTTCCCCAATGCTAGCAAG 279
|||||||||||||||| | | | || || ||| |||||| |||||||||||||||||||
Sbjct 132 AAGGTTTACGCTGCCG-T--ATTGGAGAAGCCAGGCGATGGCTTCCCCAATGCTAGCAAG 188
Query 280 TGGTACGAGTCCGTGGCTTCCCAACTTGCTAAAAG-TTTCCCTGGAAAGGCCGTTGGAGT 338
|||||||| ||||| ||||| || || |||||||| |||||| ||||| ||||| |||||
Sbjct 189 TGGTACGATTCCGTTGCTTCTCACCTCGCTAAAAGTTTTCCCGGGAAA-GCCGTCGGAGT 247
Query 339 -ACAATTCGGT-G-GCT-ctgct---gctgctgct-c-cag-ctgttgaagctgaggcac 388
| | || ||| | | | |||| ||| ||| | ||| ||| | | ||| ||
Sbjct 248 GAGAGTT-GGTGGTGGTGTTGCTCCATCTGAAGCTCCGCAGACTGAGGCACCTGCTGCTG 306
Query 389 ctgcagctg-c----a-gctgatgatgatgatga-CATG-----GATCTCTTTGGTGACG 436
||| ||||| | | | ||||||||||||||| ||| ||||| |||| ||| |
Sbjct 307 CTGGAGCTGACGGTGATGTTGATGATGATGATGATGATGATATTGATCTTTTTGCTGATG 366
Query 437 AGACCGAAGAAGA-AAAGAAAGCTGCAGAGGAGAGGGAGGCTGCTAAGAAGGACACCAAG 495
|||| ||||| || ||| |||||||| |||||||| || ||| |||||||||| || |||
Sbjct 367 AGACTGAAGATGAGAAA-AAAGCTGCTGAGGAGAGAGAAGCTTCTAAGAAGGATACTAAG 425
Query 496 AAGCCTAAAGAGAGTGGAAAGTCTTCTGTGCTCA-TGGATGTTAAGCCATGGGATGATGA 554
||| |||||||||||||||| ||||||||||| | |||| || |||||||||||||||||
Sbjct 426 AAGACTAAAGAGAGTGGAAAATCTTCTGTGCT-ACTGGAAGTAAAGCCATGGGATGATGA 484
Query 555 AACCGACATGAAGAAACTGGAAGAGGCTGTTCGTGGTGTTGAGATGCCTGGTCTTTTC-T 613
|||||| |||||||| ||||||| ||||||||| ||||| ||||||| |||| |||| |
Sbjct 485 AACCGATATGAAGAAGTTGGAAGAAGCTGTTCGTAGTGTTCAGATGCCGGGTC-TTTCAT 543
Query 614 GGGGAGCCTCAAAACTT-GTACCAGTTGGTTATGGGATCAAGAAACTCACAATTATGTTC 672
||||||| || ||| || ||||| |||||||| ||||| |||||||||||||| ||| |
Sbjct 544 GGGGAGCTTCGAAA-TTGGTACCTGTTGGTTACGGGATAAAGAAACTCACAATCATGATG 602
Query 673 ACGATTGTTGATGACCTCGTGTCCCCGGACAACCTCATTGAAGA-CTTCCTCACCTCAGA 731
|| |||||||| ||||| ||||| |||||| ||||||||||| | | |||||||||||
Sbjct 603 ACAATTGTTGACGACCTTGTGTCTGTGGACAATCTCATTGAAGACCAT-CTCACCTCAGA 661
Query 732 GCCTAACAACGAGTACATCCAGAGTTGT-GACATTGTCGCTTTCAACAAGATTTAGAGAC 790
||||||||||||||||||||| ||| || |||||||| ||||| ||||||||||||||||
Sbjct 662 GCCTAACAACGAGTACATCCAAAGT-GTCGACATTGTTGCTTTTAACAAGATTTAGAGAC 720
Query 791 TTCAAA 796
| ||||
Sbjct 721 TCCAAA 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36483631569
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5