BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19520.1
Length=2530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488845 jgi|Araly1|488845|fgenesh2_kg.6__1979__AT5G19520.1 3454 0.0
> Ahg488845 jgi|Araly1|488845|fgenesh2_kg.6__1979__AT5G19520.1
Length=2402
Score = 3454 bits (1870), Expect = 0.0
Identities = 2219/2384 (93%), Gaps = 38/2384 (2%)
Strand=Plus/Plus
Query 1 AAAGCAGAACTAAAG-TT---TC-AAGATCAATCCTTGCTT-GGC---CTTTCAGTGTCC 51
||||||||||||||| || || ||||||||||||| ||| ||| ||||||||||||
Sbjct 1 AAAGCAGAACTAAAGTTTGAATCAAAGATCAATCCTTACTTGGGCTTGCTTTCAGTGTCC 60
Query 52 TTGATTTGGTCCAACTTCTAGGCTCTTTTGGGAGCCATTGGAGTCAAACAGCACCGCAAA 111
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 61 TTGATTTGGTCCAACTTCTAGGCTCTTTTGGGAGCCATTGGAGTCAAACTGCATCGC-AA 119
Query 112 CTTATTGGTTGGAAGTGACTT-AGGGATGGCTGAGAGGAGAGTCAGTAACGGAGAAGAAG 170
||||||||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 120 CTTATTGGTTGGAGGTGACTTCA-GGATGGCAGAGAGGAGAGTCAGTAACGGAGAAGAAG 178
Query 171 TTGTTATTAATGTTTCAGATAAAGAAGATTCAAAAGATCCAAGAGCATCTCCTTCTTTCA 230
||||||||||||||||||||||||||||| ||| || | | |||||||||||||||
Sbjct 179 TTGTTATTAATGTTTCAGATAAAGAAGATCCAACAG---C---ATCATCTCCTTCTTTCA 232
Query 231 ATCCATTGGCTTCACCAGACTCCGATGCTGGGATTGAGAAATCGAAACCAGTGCCGCCCA 290
||||||||||||||||||| || ||| | ||| ||||||||| ||||||||||||||
Sbjct 233 ATCCATTGGCTTCACCAGAGTCAGATACAGGGGCTGAGAAATCAAAACCAGTGCCGCCGT 292
Query 291 TAAGCATTCCTACTCCTGAAATCTATAAGTTCTCTGGTAGCGTTCATAAGCCACCTAAAA 350
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 293 TAAGCATTCCTCCTCCTGAAATCTATAAGTTCTCTGGTAGCGTTCATAAGCCACCTAAGA 352
Query 351 TTCCAAGT-C---C--TGAAGGTCTAGTTCGGAGGAAGTCTCTTTCGAGGTCAATTTACT 404
| |||||| | | ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 353 TCCCAAGTCCTAGCAATGAAGGTCTAGTTCGGAGGAAATCTCTTTCGAGGTCAGTTTACT 412
Query 405 CCAAG-CCTAAGTCAAGGTTTGGGGAGCAACAGTCTTTTCGATACGATAGCACTAGAGAG 463
||||| || ||||||||||||||||| |||| ||||||||||||||||| | || ||||
Sbjct 413 CCAAGTCC-AAGTCAAGGTTTGGGGAACAACGGTCTTTTCGATACGATAATATTATAGAG 471
Query 464 GAAAATGGTGGAAGGTCCCTTAGGGAACAGTTTGGTGCTGGTTCATTTGCAAGGGGTTCT 523
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 472 GAAAATGGTGGAAGGTCCCTTAGGGAACAGTTTGGTGCTCCTTCATTTGCAAGGGGTTCT 531
Query 524 TTTGACAGGGCTTCTCCTAATAACAAATCCAATAGGAGCGTTGCGTCAGCAGCACTGAGT 583
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 532 TTTGACAGGGCTTCTCCTAATAACAAATCGAATAGAAGCGTTGCGTCAGCAGCACTGAGT 591
Query 584 AAAGTTGCTGAGGAGGAACCGGATGAAAATGAAGAAATCTACAAAAAGGTTAAGCTACAC 643
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 592 AAAGTTGCTGAGGAGGAAAGGGATGAAAATGAGGAAATCTACAAAAAGGTTAAGCTACAC 651
Query 644 CGAGTGAAGCGTAGCGGAATGAAACCTCTGGCCT-TTCTTGAGTTGGTAGTGTTTATGGC 702
||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct 652 CGAGTGAAGCGTAGCGGAATGAAACCTCTGG-CTCTGATTGAGTTGGTAGTGTTTATGGC 710
Query 703 CATTTTGGGGGCTTTAATTGTGAGTTTAACCATTGATGTGGTGAACAAGCATACCATTTG 762
|||||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 711 CATTTTGGCCACTTTGGTTGTGAGTTTAACCATTGATAAGGTGAACAAGCATACCATTTG 770
Query 763 GGGGTTGGAATTTTGGAAATGGT-GTGTGCTTGTGATGGTTACACTCAGCGGCATGTTGG 821
||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 771 GGGTTTGGAAGTTTGGAAATGGTCG-GTGCTTGTGATGGTTACACTCAGCGGCATGTTGG 829
Query 822 TGACAAATTGGTTCATGCATTTTGTGGTGTTCATCATAGAAAAGAACTATCTTCTTCGGA 881
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 830 TGACAAATTGGTTCATGCATTTTGCAGTGTTCCTCATAGAAAAGAACTATCTTCTTCGGA 889
Query 882 AAAAAGTTTTGTACTTTGTGCATGGGTTGAAGAAGAATGTTCAAGTCTTCATTTGGTTTA 941
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 890 AAAAAGTTCTGTACTTTGTGCATGGTTTGAAGAAGAATGTTCAAGTCTTCATTTGGTTTA 949
Query 942 GTCTGGTTCTGATTGCTTGGATATGTCTGTTCGATGGTGATGTTAAAC-GTACTCGTAAG 1000
||||||||||||||||||||||||||||||||||| | | ||||||| | ||||||||
Sbjct 950 CTCTGGTTCTGATTGCTTGGATATGTCTGTTCGATGATAACGTTAAACACT-CTCGTAAG 1008
Query 1001 ACCAAGAGATTTCTAGACTTCATCACTTGGACTATTGTCTCTCTTCTCGTAGGGTCAATC 1060
||||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1009 ACCAAGAAATTTCTCGACTTCATTACTTGGACTATTGTCTCCCTTCTCGTAGGGTCAATC 1068
Query 1061 CTTTTCTTGGTGAAGACGTTTGCCTTGAAAGTTCTTGCTTCAAAGTTCAACGTCAGAAAC 1120
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1069 CTTTTCTTGGTAAAGACGTTTGCCTTGAAAGTTCTTGCATCAAAGTTCAACGTCAGAAAC 1128
Query 1121 TTCTTTGAGAGGATTCAAGAGTCTGTTTTCCACCAATACGTTCTTCAGACTCTCTCGGGA 1180
||||||||||| |||||||||||| ||||| ||||||||||||| || ||||||||||||
Sbjct 1129 TTCTTTGAGAGAATTCAAGAGTCTATTTTCAACCAATACGTTCTCCAAACTCTCTCGGGA 1188
Query 1181 CCTCCGCTTATCGAAGAGGCAGAGAACGTTGGGCGCGTGCCAAGCACAGGTCACCTAAGT 1240
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1189 CCTCCGCTTATAGAAGAGGCAGAGAACGTTGGGCGTGTGCCAAGCACAGGCCACCTAAGT 1248
Query 1241 TTCACAAGAACCAAAGATGGAAAGGTGAAAGACAAGAAAGTGATCGATATGGGAAAGGTT 1300
|||||||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1249 TTCACAAGCACCAAGGATGGAAAAGTGAAAGACAAGAAAGTGATCGATATGGGTAAGGTT 1308
Query 1301 CACAGGATGAAACAAGAGAAGGTCTCTGCTTGGACAATGCGTGTTTTGATCGAAGCCGTG 1360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1309 CACAGGATGAAACAAGAGAAGGTCTCTGCTTGGACAATGCGTGTTTTGATCGAAGCGGTG 1368
Query 1361 GGAACTTCAGGTATATCAACCATATCCAGCACTCTAGACGAGGTCAACAATAAGAAAGAG 1420
||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1369 GGAACTTCAGGTATATCTACCATATCCAGCACTTTAGATGAGGTCAACAATAAGAAAGAG 1428
Query 1421 -AGAACAGATAAAGAGATAACAAATGAGATGGAGGCTGTTGCTGCTGCTTATGACGTCTT 1479
| || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1429 CA-AAAAGATAAAGAGATAACAAATGAGATGGAGGCTGTGGCTGCTGCTTATGAAGTCTT 1487
Query 1480 CAACAATGTCGCTAAGCCAAACCACAATTACATAGAAGAAGATGACTTATTGAGGTTCAT 1539
||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1488 CAAAAATGTTGCTAAGCCGAACCATAATTACATAGAAGAAGATGACCTATTGAGGTTCAT 1547
Query 1540 GATAAAGGAAGAAGTAGACCTTGTACTCCCATTAATAGAAGATGCCGACACCGGAAAAAT 1599
||| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1548 GATTAGGGAAGAGGTAGACCTAGTACTCCCATTAATAGAAGATGCCGACACCGGAAAAAT 1607
Query 1600 CACACGCAAGACTTTTACAGAATGGGTGGTTAATGTATACACAAGTCGGAAAACTATAGG 1659
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1608 CACACGCAAGACTTTTACAGAATGGGTGGTTAATGTTTACACAAGTCGGAAAACTATAGG 1667
Query 1660 GCATTCACTGAACGACACAAAAACAGCGGTTAAGCAGTTGGACAAACTTATAACTGGAAT 1719
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1668 GCATTCATTGAACGACACAAAAACAGCGGTTAAGCAGCTGGACAAACTTGTAACTGGAAT 1727
Query 1720 CTTGACCGTTATCACATTCATTGTTTGGATGGTACTTCTGGATATAGCATCGACCAAGCT 1779
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1728 CTTGACCATTATCACATTCATTGTTTGGTTGGTACTTCTGGATATAGCATCGACCAAGCT 1787
Query 1780 TTTATTGGTCTTCTCCTCACAATTTTTGGGTCTTGCTTTCATGATCGGAAGTACTTGTAA 1839
||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1788 TTTGTTGGTCTTCTCATCACAATTTGTGGGTCTTGCTTTCATGATCGGAAGCACTTGTAA 1847
Query 1840 GAATATCTTCGAATCCTTTATGTTCGTCTTTGTGATGCATCCTTATGACGTCGGAGATCG 1899
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 1848 GAATATCTTTGAATCCTTTATGTTCGTCTTCGTAATGCATCCTTATGACGTCGGAGACCG 1907
Query 1900 TTGCGTTGTCGACGGTGTTATGTTGTTGGTTGAAGAAATAGATCTTTTAACAACCGTGTT 1959
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1908 TTGCGTTGTCGACGGTGTTATGTTGCTGGTTGAAGAAATAGATCTTTTAACGACCGTGTT 1967
Query 1960 CCTCAAGATTGACAACGAGAAAGTGTTCTACCCAAATTCGGTTTTAATATCGAAACCGAT 2019
|||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 1968 CCTCAAGATTGACAACGAGAAAGTGTTCTATCCAAACTCGGTTTTAATATCAAAACCGAT 2027
Query 2020 AAGCAACTTCTACAGAAGTCCAGATATGGGAGATTATGTCGACTTCGGCATCGCATTCTC 2079
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 2028 AAGCAACTTCTACAGAAGTCCAGATATGGGAGATTATGTCGACTTCGCCATTGCATTCTC 2087
Query 2080 AACACCGGCCGAGAAAATCGGCTGTCTCAAGGGAAAAATCGGAGAATACTTGGTGGCAAA 2139
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2088 AACACCGGCCGAGAAAATCGGCAGTCTCAAGGGAAAAATCGGAGAATACTTGGTGGCAAA 2147
Query 2140 CTCACAACATTGGTATCCAGAAGCACAGGTGATGGTGAGGGCAATTGAGAATATGAACAA 2199
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 2148 CTCACAACATTGGTATCCAGAAGCCCAGGTGATGGTGAGGGCGATTGAGAATATGAACAA 2207
Query 2200 GCTGGTATTGAATATACTGGTCCAACACACGATAAATTTCCAAGTATATGTAGAGAAGAG 2259
|||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||
Sbjct 2208 GCTGGTATTGAATATACTGGTCCAGCACACCATAAACTTCCAAGTATACATAGAGAAGAG 2267
Query 2260 TTTAAGAAGAACCGCGCTGATCATCGCAATCAAGCGAATTCTCGAGGATCTTGAGATCGA 2319
| |||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 2268 TAGAAGAAGAACCGCACTGATCATCGCAATCAAGCGGATTCTTGAGGAGCTTGAGATCGA 2327
Query 2320 TTACA-CTCTCCTTCCTCAAGATGT-CAATCTCACTGGTCACAA 2361
||||| | ||||||||||||||||| || |||||||| |||||
Sbjct 2328 TTACAGC-CTCCTTCCTCAAGATGTTCA-TCTCACTGAACACAA 2369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95377973480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5