BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19530.1
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941503 jgi|Araly1|941503|scaffold_602047.1 1738 0.0
> Ahg941503 jgi|Araly1|941503|scaffold_602047.1
Length=1060
Score = 1738 bits (941), Expect = 0.0
Identities = 1023/1062 (96%), Gaps = 7/1062 (1%)
Strand=Plus/Plus
Query 104 ttctc-ctc--AACTTGGATATGGGTGAAGCCGTAGAGGTCATGTTCGGAAATGGGTTCC 160
||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1 TTCTCTCTCAGAACTTGGATATGGGTGAAGCCGTAGAGATCATGTTCGGAAATGGATTCC 60
Query 161 CGGAGATTCACAAAGCCACATCACCCACTCAAACCCTCCACTCTAACCAGCAAGACTGCC 220
| ||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 61 CAGAGATTCACAAAGACACATCACCCATTCAAACCCTCCACTCCAACCAGCAGGACTGCC 120
Query 221 ATTGGTATGAAGAAACCATCGATGATGATCTCAAGTGGTCTTTTGCCCTCAACAGTGTTC 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGGTATGAAGAAACCATCGATGATGATCTCAAGTGGTCTTTTGCCCTCAACAGTGTTC 180
Query 281 TCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGACACCAAACGTTTTGGAA 340
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGATACCAAACGTTTTGGAA 240
Query 341 AGGTGCTTGTGATTGATGGGAAAATGCAAAGTGCTGAGAGAGATGAGTTTATCTACCATG 400
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 AGGTGCTTGTGATTGATGGGAAAATGCAAAGTGCAGAGAGAGATGAGTTTATCTACCATG 300
Query 401 AATGTTTGATCCATCCCG-CTCTCCTTTTCCATCCCAACCCCAAGACTGTGTTTATAATG 459
||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AATGTTTGATCCA-CCCGGCCCTCCTTTTCCATCCCAACCCCAAGACGGTGTTTATAATG 359
Query 460 GGAGGAGGTGAAGGCTCTGCTGCAAGAGAAATACTAAAACACACGACGATCGAGAAAGTT 519
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 GGAGGAGGTGAAGGCTCTGCTGCTAGAGAAATACTAAAACACACGACGATCGAGAAAGTT 419
Query 520 GTTATGTGTGATATTGATCAGGAAGTTGTTGATTTTTGCAGAAGATTTCTGACCGTTAAC 579
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 GTCATGTGTGATATTGATCAGGAAGTTGTTGACTTTTGCAGAAGATTTCTGACCGTTAAC 479
Query 580 AGCGATGCTTTCTGTAACAAAAAGCTTGAACTTGTGATCAAAGATGCAAAGGCTGAATTA 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCGATGCTTTCTGTAACAAAAAGCTTGAACTTGTGATCAAAGATGCAAAGGCTGAATTG 539
Query 640 GAGAAAAGGGAAGAGAAGTTTGATATCATAGTGGGAGATTTAGCTGATCCAGTGGAAGGT 699
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 540 GAGAAAAGAGAAGAGAAGTTTGATATCATAGTAGGAGATTTAGCCGATCCAGTGGAAGGT 599
Query 700 GGACCTTGTTATCAGCTCTACACCAAATCCTTCTACCAAAACATTCTCAAACCCAAGCTT 759
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 600 GGACCTTGTTATCAGCTCTACACGAAATCCTTCTACCAAAACATCCTCAAACCCAAGCTT 659
Query 760 AGCCCTAATGGCATTTTTGTCACCCAGGCTGGACCAGCAGGAATATTCACTCATAAGGAA 819
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGCCCCAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGAATATTCACTCATAAGGAA 719
Query 820 GTCTTCACATCAATCTACAACACCATGAAGCAAGTCTTCAAGTACGTGAAGGCTTACACA 879
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 720 GTCTTCACATCAATCTACAACACCATGAAGCAAGTGTTCAAGTACGTAAAGGCTTACACA 779
Query 880 GCACATGTGCCATCATTTGCGGACACATGGGGATGGGTGATGGCATCGGACCACGAGTTT 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCACATGTGCCATCATTTGCGGACACATGGGGATGGGTGATGGCATCGGACCACGAGTTT 839
Query 940 GACGTTGAAGTTGATGAAATGGATCGAAGAATCGAAGAGAGAGTTAACGGAGAATTGATG 999
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 GATGTTGAAGTTGATGAAATGGATCGAAGAATCGAAGAGAGAGTTAAAGGAGAATTGATG 899
Query 1000 TATCTAAACGCTCCTTCTTTCGTCTCTGCTGCTACTCTCAACAAAACCATCTCTCTCGCG 1059
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TATTTAAACGCTCCTTCTTTCGTCTCTGCTGCTACTCTCAACAAAACCATCTCTCTCGCA 959
Query 1060 CTAGAGAAGGAGACTGAAGTTTATAGTGAAGAGAATGCGAGATTCATTCATGGTCATGGT 1119
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 960 CTGGAGAAGGAGACTGAAGTTTATAGTGAAGAGAACGCGAGATTCATTCATGGTCATGGT 1019
Query 1120 GTGGCGTACCGGCATATTTAAA-GACGAACCGGTTTCAGTTT 1160
|||||||||||||||||||||| || ||||||||| || |||
Sbjct 1020 GTGGCGTACCGGCATATTTAAAAGAAGAACCGGTT-CAATTT 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50817848361
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5