BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19540.1
Length=1600
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488848 jgi|Araly1|488848|fgenesh2_kg.6__1982__AT5G19540.1 2242 0.0
> Ahg488848 jgi|Araly1|488848|fgenesh2_kg.6__1982__AT5G19540.1
Length=1489
Score = 2242 bits (1214), Expect = 0.0
Identities = 1375/1451 (95%), Gaps = 18/1451 (1%)
Strand=Plus/Plus
Query 16 TATCCCGTAAAACAAAAACGAGGGAGGAACCATGGCGGTGAGCTCATTCGCCGTCCTTCC 75
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TATCCCGTAAAACAAAATCAAGGGAGGAACCATGGCGGTGAGCTCCTTCGCCGTCCTTCC 60
Query 76 TCCATTTGGTTCCTCATACAGCTCCACAACCGATAGATCTTCTTCTTCTTC--GTT-TTA 132
||| ||||| || |||||||||||||||| ||||||||||||||||| || |||
Sbjct 61 TCCGTTTGG----TC--ACAGCTCCACAACCGAAAGATCTTCTTCTTCTTCTTCTTCTTA 114
Query 133 CTCATCTTCGAAACTTCTCCGCATATCTCAATACCGGTTCCAGTCAAATTCCCGTTGTCC 192
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 115 CTCATCTTCGAAACTTCTCCGCATACCTCAATACCGGTTCCGGTCAAATTCCCGTTGTCC 174
Query 193 AAATGTGTTCGTCTCGTGCTCACTGAATC-AGCCTTCTGATGATGCTTCCGACGCCGCCC 251
||||||||| ||||||| ||||||||||| | || |||||||||||||||||||||||||
Sbjct 175 AAATGTGTTTGTCTCGTCCTCACTGAATCTA-CCGTCTGATGATGCTTCCGACGCCGCCC 233
Query 252 TTTTTCTCGAATCCAATTCAATTGCTGATTACATGCGGTTCAAACGCCGTCCCGACCCCG 311
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 234 TTTTTCTAGAATCCAATTCAATTGCTGATTACATGAGGTTCAAACGCCGTCCCGACGCCG 293
Query 312 GAAATGGTACCAGCGAGTTGCAGACTGCAATCGTGAGTTACAAGAAACGTTTCCCTTGGA 371
||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 294 GAAATGGCACCAGCGAGTTACAGACTGCAATCGTCAGCTACAAGAAACGTTTCCCTTGGA 353
Query 372 TTCTTCTCAACCCTTTTCTTCAGGTGGATTTGGTCTCAACTATTCATATTGCAGATAAAG 431
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 354 TTCTTCTCAACCCTTTTCTTCAGGTAGATTTGGTCTCAACGATTCATATTGCAGATAAAG 413
Query 432 AGTACTTCACAACTCTTCAGAAGGAGCTTGAACCATATGATTCTATCTTGTATGAGATGG 491
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGTACTTCACAACTCTTCAAAAGGAGCTTGAACCATATGATTCTATCTTGTATGAGATGG 473
Query 492 TGGCTAGTAAAGAGACCTTGGAAAACAGGAGAAACCCTATTGCATCTAAGAGGCTCAAGA 551
|||||||||||||||||||||||||||||| |||||| |||||| | ||||| |||||||
Sbjct 474 TGGCTAGTAAAGAGACCTTGGAAAACAGGAAAAACCCAATTGCAGCCAAGAGACTCAAGA 533
Query 552 GTTCTCGTTCAAGAGGTTTCAGTATTCTTGGGTTCATTCAGCGGCAGATGGCAAGAGTAC 611
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||
Sbjct 534 GTTCTCGTTCAAGAGGCTTCAGTATTCTCGGTTTCATTCAGCGGCAGATGGCAAGAGTAC 593
Query 612 TAACACTTGATTTTCAGCTAGATTGTCTAGATTACGATACTGAGAATTGGTACCATGCTG 671
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 594 TAACACTTGATTTTCAGCTAGATTGTCTAGATTACGAAACTGAGAATTGGTACCATGCTG 653
Query 672 ATCTCGATTTCGAGACATTCCAGTTGCTTCAGAAGGAGAAAGGAGAAAGCTTCTTCTCAT 731
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ATCTCGATTTCGAGACTTTCCAGTTGCTTCAGAAGGAGAAAGGAGAAAGCTTCTTCTCAT 713
Query 732 TTGCCAGGGACATGACTATTAGATCAACAAAAGCAATGATACAGCCAGCTTTGGTAACTG 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 714 TTGCCAGGGACATGACTATTAGATCAACAAAAGCAATGATACAGCCAGCTTTGGAAACTG 773
Query 792 AAGGTCGTGATACTTGGAGGTCAAAGCTTCTATGGGTTTCACGGGTTTTTCCTATGCCTC 851
|| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AAAGTCTTGATACATGGAGGTCAAAGCTTCTATGGGTTTCACGGGTTTTTCCTATGCCTC 833
Query 852 TTGTGGGTCTTTTCCTAATCGGGGCTTTTTGTGCTGACTTTGGAGATCAGACCTCAGACT 911
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 834 TTGTGGGTCTTTTCCTAATTGGGGCTTTTTGTGCTGACTTTGGAGATCAGACGTCAGACT 893
Query 912 ATCCAGAATTAGAAGCACTTTCACGGCTTGACTTTGGAGCTGCTATGAAGGTTTTCCTTG 971
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 894 ATCCAGAATTGGAAGCACTTTCACGGCTTGACTTTGGAGCTGCTATGAAGGTTTTCCTCG 953
Query 972 CTAAGAGATTGACATCCGAGCTAACACTAGAGACATCAGATATAGAGGAAAAATCTGTCA 1031
|||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 954 CTAAGAGATTGACATCTGAGCTAACACAAGAGACATCAGATATAGAGGAGAAATCTGTCA 1013
Query 1032 TCATTGGTGAGAGAAACCGAGCAGCTACGGAAGCTTTAAGAAGAGCAATAGAGCAAGGAC 1091
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
Sbjct 1014 TCATTGGTGAGAGAAACCGAGCAGCTACAGAAGCTTTAAGAAGAGCAATGGAGCAAGGGC 1073
Query 1092 ACAAGAGAATTGGAATTCTATATGGCGGAGGCCACATGCCCGACCTGGGAAGACGACTGA 1151
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1074 ACAAGAGAATTGGAATTCTTTATGGCGGAGGCCACATGCCTGACCTGGGAAGACGACTGA 1133
Query 1152 GAGAAGAGTTTGATCTTGTTCCTT-CAGAGGTAAGATGGGTAACAGCTTGGTCCATCAGA 1210
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1134 GAGAAGAGTTTGATCTTGTTCCTTGC-GAGGTAAGATGGGTAACAGCTTGGTCCATCAGA 1192
Query 1211 AATCCAACGGACTTGGAGACTAGTTCATATCCGATTCTGAGGAAAATGGCAGAGGCTTTG 1270
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1193 AATCCAACGGACTTGGAGACTAGTTCATATCCGATTCTGAGGAGAATGGCAGAGGCTTTG 1252
Query 1271 CGTTGGCCACTAAACCGGTACCAAACATTGGCATTGCTAATATTTTCATCTGTACTTGCA 1330
|||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||
Sbjct 1253 CGTTGGCCACTAAACCGGTACCAAACCTTGGCATTACTAATATTTTCATCAGTGCTTGCA 1312
Query 1331 CTGGATCTCTGCTTTTGGGAGCTCTTCTTTGGTTCGACAATTGACTGGGCTACCCAGATA 1390
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1313 CTGGATCTCTGCTTCTGGGAGCTCTTCTTTGGTTCGACAATTGACTGGGCTTCCCAGATA 1372
Query 1391 GGTGCAGAGTTATACCAGTTTA-TAGATAATACAAAAA-T-TGTATGACGCAGCACAGAA 1447
||||||||||| |||||||| | ||||||||||||||| | |||| || ||| ||||||
Sbjct 1373 GGTGCAGAGTTGTACCAGTT-AGTAGATAATACAAAAAATGTGTAACACACAG-ACAGAA 1430
Query 1448 TCATGTACAAA 1458
|||||||||||
Sbjct 1431 TCATGTACAAA 1441
Score = 78.7 bits (42), Expect = 1e-13
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1494 TCTGTTGTAAAGCAAACATGGCTCTGATGTCAAAGAAATCTATTGAAT 1541
||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1442 TCTGTTGAAAAGCAAACATTGCTCTGATGTCAAAGAAATCTATTGAAT 1489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59954045630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5