BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19560.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488850 jgi|Araly1|488850|fgenesh2_kg.6__1984__AT5G19560.1 2610 0.0
> Ahg488850 jgi|Araly1|488850|fgenesh2_kg.6__1984__AT5G19560.1
Length=1802
Score = 2610 bits (1413), Expect = 0.0
Identities = 1700/1829 (93%), Gaps = 57/1829 (3%)
Strand=Plus/Plus
Query 1 ATGTTCGATGGTCGGAACTCTGGACATTCATCTTTCTCTTCTCGTGGGGATGGCATGCAT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTTCGATGGTCGGAACTCTGGACATTCATCCTTCTCTTCTCGTGGGGATGGCATGCAT 60
Query 61 ACACCCGAGCACGAAC-T--CG--C-CGG-A--CATGCTGCACCATCCACTCGTAGAGGC 111
|||||||||||||||| | || | || | ||||||||||||||||||||||||||
Sbjct 61 ACACCCGAGCACGAACTTGCCGTACATGGAATGGATGCTGCACCATCCACTCGTAGAGGC 120
Query 112 AAGCAAAATAGGAGATCAGACATGGAAGTGATGAAGGAAAGATTCGCAAAACTGCTTCTT 171
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 121 AAGCAAAGTAGGAGATCAGACATTGAAGTGATGAAGGAAAGATTCGCAAAACTGCTACTT 180
Query 172 GGAGAGGACATGTCAGGCGGT-GGGACAGGGGAGACCTCTGCGTTAGCTTTGTCAAACGC 230
||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||
Sbjct 181 GGAGAGGACATGTCAGGCGGTGGGGA-TGGGGTGACCTCTGCGTTAGCTTTGTCAAACGC 239
Query 231 CATCACCAAACTCGCTGATTCGATGTTTGGAGAGCAGATGAAATTGCAGCCTATGTATCC 290
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 240 CATCACCAAACTCGCTGATTCAATGTTTGGGGAGCAGATGAAATTGCAGCCTATGTATCC 299
Query 291 GGAGACAAAAGAGAATTGGAGGAAAGAAATGGGTTGGTTATTATCTGTGATTGATCACAT 350
||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 300 AGAGACAAAAGAGATTTGGAGGAAAGAAATGGATTGGTTATTATCTGTGGTTGATCACAT 359
Query 351 TGTCCAGTTTGTTCCTTCTAGACAAATGGGTAAAAATGGCCAATTCACTGAGATCATGGT 410
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 360 TGTCCAGTTTGTTCCTTCTAAACAAATGGGCAAAAATGGCCAATTCACTGAGATCATGGT 419
Query 411 TACAAAACAAAGAGATGATTTGCTGACGAACATTCCAGCTTTACGCAAACTTGACTCGGT 470
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GACGAAACAAAGAGATGATTTGCTGACGAACATTCCAGCTTTACGCAAACTTGACTCGGT 479
Query 471 TCTTCTCGAAACTTTGGACAACTTCAAGGATCAGAAAGACTTTTGGTATGTGCCAAGAGA 530
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 TCTTCTCGAAACTTTGGACAACTTCAAGGATCAGAAAGAGTTTTGGTATGTGCCAAGAGA 539
Query 531 TATGGAGGATGCAGATCACAATGGAGATTGGAGGAGGGATGAGAACTGGTGGTTACCAGT 590
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 TATTGAGGATGCAGATCACAATGGAGATTGGAGGAGGGATGAGAACTGGTGGCTACCAGT 599
Query 591 TGTTAAGGTTCCAACAGATGGCTTGTCTGAGGAATCACGTAGATGGTTGCAGAATCAGAA 650
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TGTTAAAGTTCCAACAGATGGTTTGTCTGAGGAATCACGTAGATGGTTGCAAAATCAGAA 659
Query 651 AGATTCTGTGGCTCAAGTCCTTAAAGCCGCCACGGCCATCAATGCTCATGTATTGTCTGA 710
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGATTCTGTGGCACAAGTCCTTAAAGCCGCCACGGCCATCAATGCTCATGTATTGTCTGA 719
Query 711 AATGCACGTTCCTGAAAACTACATTGATTCCCTTCCAAAGAATGGGAAGACAAGCTTGGG 770
||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 720 AATGCACATTCCTGAAAACTACATTGATTCCCTTCCGAAGAATGGGAAGACAAGTTTGGG 779
Query 771 AGATTTTCTTTACAAGAGCATAACAGAGGAGA-GCTTTGATCCTGACTACTTTGTCTCTT 829
||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 780 CGATTTTCTTTACAAGAGCATAACAGAGGA-ATGCTTTGATCCTGACTACTTTGTTTCTT 838
Query 830 TCTTGGATTTGTCAACGGAACACAAAGTACTTGATCTAAAGAACAGGATTGAAGCTTCCA 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTTGGATTTGTCAACGGAACACAAAGTACTTGATCTAAAGAACAGGATTGAAGCTTCCA 898
Query 890 TGGTGATCTGGAAGAGGAAGATGTGCCAGAAAGAGAAAGACGGGAAATCTCAGTGGGGAT 949
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 899 TGGTGATTTGGAAGAGGAAGATGTGCCAGAAGGAGAAAGACGGGAAATCGCAGTGGGGAT 958
Query 950 CCACTGTTAGCTTAGAGAAGAGGGAGCTTTTCGAAGTCCGAGCTGAGACCATTTTGGTTA 1009
| || ||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 959 CAACCGTTAGCTTAGAGAAGAGAGAGCTTTTTGAGGTCCGAGCTGAGACCATTTTGGTTA 1018
Query 1010 TGCTCAAACAACAATTTCCTGGGATCCCACAATCCTCCCTTGAAGTCTCCAAGATTAAAA 1069
|||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1019 TGCTCAAACAGCAATTCCCTGGAATCCCACAATCCTCACTTGAAGTCTCCAAGATTAAAA 1078
Query 1070 ACAACAAGGATGTTGGACAGGCGATTTTGGAGAGCTATTCAAGGGTACTAGAGAGTCTTG 1129
|||||||||| |||||||||||||||||||||||||||| |||||| |||| ||||| |
Sbjct 1079 ACAACAAGGACATTGGACAGGCGATTTTGGAGAGCTATTCGAGGGTATTAGAAAGTCTGG 1138
Query 1130 CTTCAAAGATAATGTCAAGAATAGAGGATGTTCTTGAAGCCGATCGGCTAGTTCAAAGAC 1189
|||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1139 CTTCGAAGATAATGTCGAGAATAGAGCATGTTCTTGAAGCTGATCGGCTAGTTCAAAGAC 1198
Query 1190 AGTTGATGGGAGAGGCAGAGACAAGATCAGAAAGCGAGGCAGAATCAGAATACGAGGAAA 1249
| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1199 AATTGATGGGAGAGGTAGAGACAAGATCAGAAAGCGAGGCAGAATCAGAATATGAGGAAA 1258
Query 1250 CTGAAAAGGTGGTTGCAGCGGAAACACCAAACTCGAGGAAACTATCAGACTTCATAGGGT 1309
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCGAAAAGGTGGTAGCAGCGGAAACACCAAACTCGAGGAAACTATCAGACTTCATAGGGT 1318
Query 1310 GGAGATTGTCATCTGATACTAAGAAGCATAGTTCAATGAGTGATATAGAATTCTTCCACA 1369
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GGAGATTGTCATCAGATACTAAGAAGCATAGTTCAATGAGTGATATAGAATTCTTCCACA 1378
Query 1370 AAGTTGAGCAGGAGAAGGAGAAGCCCATGATGAAGTCTCCAAGAGCTCTACCGAAGAAAT 1429
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AAGTTGAGCAAGAGAAGGAGAAGCCCATGATGAAGTCTCCAAGAGCTCTACCGAAGAAAT 1438
Query 1430 TTTCATATCTAGCAAAGTTAGAGAACATGAGAAGCCCTAGTGACAGACACTGATAGTgaa 1489
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1439 TTTCATATCTAGCAAAGTTAGAGAACATGAGAAGCCCGAGTGACAGACACTGATAGTGAA 1498
Query 1490 aagagaaggtaatagaacagggcatagaagaagaa--aaaca-----caaagagagtgag 1542
|||| ||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 1499 AAGATCAGGTAATAGAACAGGGCATAGAAGAAGAAGGAAAAAAAAAACAAAGAGAGTGAG 1558
Query 1543 a--gagagagaataga-agaagGTTAAAGTGTGTGAGAATGT--ACATATATAACAATGC 1597
| ||||||||||||| || || ||||||||||||||||||| ||||||||||||||||
Sbjct 1559 AAAGAGAGAGAATAGAGAGGAGATTAAAGTGTGTGAGAATGTGTACATATATAACAATGC 1618
Query 1598 AGGC-AT--T-GGTTTTAGGATTTGGACAT-GAG--ACTTGGTGTTTGATCATGATTGTT 1650
|||| || | ||||||||||||||| || ||| || |||| | ||||||| ||| |
Sbjct 1619 AGGCGATGGTTGGTTTTAGGATTTGGTGATAGAGTGACCTGGT-T--GATCATGTTTGCT 1675
Query 1651 GCTTGTTTTGACTATTGCTTCCTGTTGTTTTTTCTAAGAAGGAAGTGTGATTCAGTGTGT 1710
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||
Sbjct 1676 GCTTGTTTTGACTATTGCTTCCTGTTGTTTTTTCTAAGAGGGAAGTGTGATT---T-TG- 1730
Query 1711 AACAATATTTTGGTATTTTTGTTCTTTGGTGTTTTGTATTGTAACGTCTAATCTACAACA 1770
| ||||||||| | ||||||||||||| ||||||||||||| | | | ||
Sbjct 1731 A----TATTTTGGT-T-------CTTTGGTGTTTTGCATTGTAACGTCTA-T--A-A-CA 1773
Query 1771 TTGTTTCCTAATGGATTTTGAAGCTCATT 1799
|||||||||||||||||||||||||||||
Sbjct 1774 TTGTTTCCTAATGGATTTTGAAGCTCATT 1802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5