BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G19570.1

Length=504
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488851 jgi|Araly1|488851|fgenesh2_kg.6__1985__AT5G19570.1         736    0.0  


> Ahg488851 jgi|Araly1|488851|fgenesh2_kg.6__1985__AT5G19570.1
Length=475

 Score =  736 bits (398),  Expect = 0.0
 Identities = 450/475 (95%), Gaps = 3/475 (1%)
 Strand=Plus/Plus

Query  32   CACCGGCGATGAAGGAAGACATGGATAAGATGGTGGCGGTAGGGCTCGTATGGGGAGCCA  91
            ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  1    CACCGGCGATGAAGGAAGACATGGAGAAGATGGTGGCGGTAGGCCTCGTATGGGGAGCCA  60

Query  92   CCAATGCTCTGATCCGTCGTGGCGCTCTTGCCTGGGATAAAACAAAGTCTTCTTCGACAA  151
            |||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct  61   CCAATGCTCTGATCCGCCGCGGCGCTCTCGCCTGGGATAAAACAAAGTCTTCTTCGACAA  120

Query  152  CAGAATCTCAT--T-CTCCTCCTCTTCAGATCCGCCGCAAAATCATGATTGCTCTCCGCG  208
            ||||||||| |  | || |||| |||||||||||||||||||||||||||||||| ||||
Sbjct  121  CAGAATCTCCTCCTCCTTCTCCACTTCAGATCCGCCGCAAAATCATGATTGCTCTTCGCG  180

Query  209  ACTGGATCAATCTCCTCCTCTTCTGGCAATACTCAATTCCTTTCCTCATAAACCTCTCCG  268
            | |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct  181  ATTGGATCAATCTCCTCCTCTTCTGGCAATACTCGATTCCTTTCCTCATTAATCTCTCCG  240

Query  269  CCTCCGCCACATTCTTCGCCCTTCTCAGTCACGCTCCCATCTCTCTTGCCGTTCCGGTGA  328
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct  241  CCTCCGCCACATTCTTCGCCCTTCTCAGTCACGCTCCTATCTCTCTTGCCGTTCCGGTCA  300

Query  329  CTAACGCCACAACCTTTGCCGCAACCGCCGCTTTTGGGATCCTTTTAGGGGAAGAAACTC  388
            | |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CCAACGCCACTACTTTTGCCGCAACCGCCGCTTTTGGGATCCTTTTAGGGGAAGAAACTC  360

Query  389  AAATCGGACTTGCTTTGTTAGGTACGAGCTTTATTGTATTTGGAATTTGGCTTTGTGTTC  448
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AGATCGGACTTGCTTTGTTAGGTACGAGCTTTATTGTATTTGGAATTTGGCTTTGTGTTC  420

Query  449  TGTGAAATTCGAATTTTGTAAAACCGTGACTCTGTTTCTGTGAGATCTATTTTGC  503
            |||||| || |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  421  TGTGAACTTGGAATTTTGTAAAACCGTGACTCTGTTTCTGCGAGATCTATTTTGC  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18314682720


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5