BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19600.1
Length=2309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488854 jgi|Araly1|488854|fgenesh2_kg.6__1988__AT5G19600.1 3376 0.0
> Ahg488854 jgi|Araly1|488854|fgenesh2_kg.6__1988__AT5G19600.1
Length=2251
Score = 3376 bits (1828), Expect = 0.0
Identities = 2014/2103 (96%), Gaps = 16/2103 (1%)
Strand=Plus/Plus
Query 1 GTTCTCTACAACGAACTTTAAAGTAACAAAGTACACAGAAAG--GTTTTTACTTCTTCCT 58
|||||||| ||||||||| |||||||||||||| |||||||| ||||||| |||||||
Sbjct 1 GTTCTCTAAAACGAACTTAAAAGTAACAAAGTAGACAGAAAGTTTTTTTTACCTCTTCCT 60
Query 59 TGCTTG-T-TGTGTGTATTCTCATTCACATACAATTGtttttttGTAACTATGGAGAATA 116
|||||| | |||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct 61 TGCTTGTTGTGTGTGTATTCT--TTCATATACAATTGTTTTGTTGTAACTATGGAGAATA 118
Query 117 CTATAACGAGCTCTACCTCCTCACCGAAGGGCCGGGGAGTAAATTTCTC-GACCCCGAGA 175
||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 119 CTATAACGAGCTCCACCTCCTCACCCAAGGGCCGGGGAGTAAATTTCTCTG-CCCCGAGA 177
Query 176 GGCTTTGGTTCAAAATTTAAGTCAAAATGTAAAGAAACCTTCTTTCCCGATGATCCATTC 235
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGCTTTGGTTCAAAATTTAAGACAAAATGTAAAGAAACCTTCTTTCCCGATGATCCATTC 237
Query 236 AAACCGATATCGCAAGAGCCAAACCGTTTGCTAAAAACAAAGAAGTTATTGGAGTATTTT 295
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 238 AAACCGATATCGCAAGAGCCAAACCGTTTGATAAAAACAAAAAAGTTATTGGAGTATTTT 297
Query 296 GTGCCAATCTTTGAGTGGCTCCCAAAGTATGATATGCAAAAACTAAAGTATGATGTGCTC 355
|| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 298 GTACCAATCTTTGAGTGGCTCCCAAAGTACGATATGCAAAAACTTAAGTACGATGTGCTC 357
Query 356 GCCGGAATCACCATCACCAGTCTTGCTGTTCCTCAGGGCATCAGCTATGCTAAGCTCGCC 415
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 358 GCAGGAATCACCATCACCAGTCTTGCCGTTCCTCAGGGTATAAGCTATGCTAAGCTCGCC 417
Query 416 AGTATCCCTCCCATCATAGGCCTATATTCAAGTTTTGTGCCGCCTTTTGTGTATGCCGTG 475
|||||||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 418 AGTATCCCACCCATCATTGGCCTATATTCAAGTTTCGTGCCGCCATTTGTGTACGCCGTG 477
Query 476 TTCGGAAGTTCGAACAATCTGGCAGTGGGAACAGTCGCAGCATGCTCTTTGCTGATCGCT 535
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 TTCGGAAGTTCAAACAATCTGGCAGTGGGAACAGTCGCAGCATGCTCTTTGCTGATAGCT 537
Query 536 GAGACATTCGGTGAGGAGATGAT-AAAAAATGAGCCTGAACTCTACCTTCATTTGATCTT 594
||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||
Sbjct 538 GAGACATTCGGTGAGGAAATG-TCCAAAAATGAACCTGAACTCTACCTTCATTTGATCTT 596
Query 595 CACCGCCACTCTCATCACCGGTCTATTCCAATTTGCTATGGGATTCTTGAGGTTGGGGAT 654
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 597 CACCGCCACTCTCATCACCGGTCTATTCCAATTTGCTATGGGCTTCTTGAGGTTGGGGAT 656
Query 655 ATTGGTGGATTTCTTGTCACACTCGACCATAACGGGCTTCATGGGCGGTACCGCAATCAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 ATTGGTGGATTTCTTGTCACACTCGACCATAACGGGCTTCATGGGCGGTACCGCAATCAT 716
Query 715 CATTCTCCTACAACAGCTTAAGGGCATCTTTGGACTAGTCCATTTTACGCACAAAACCGA 774
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CATTCTCCTCCAACAGCTTAAGGGCATCTTTGGACTAGTCCATTTTACGCACAAAACCGA 776
Query 775 TGTCGTATCAGTTCTCCACTCAATCTTAGACAACCGGGCTGAGTGGAAGTGGCAAAGTAC 834
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 777 TGTCGTATCAGTTCTCCACTCAATCTTAGACAACCGTGCTGAGTGGAAGTGGCAAAGTAC 836
Query 835 CTTGGCTGGTGTCTGCTTTCTTGTATTTCTACAATCCACTCGATACATAAAGCAAAGATA 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 CTTGGCTGGTGTCTGCTTTCTTGTATTTCTACAATCCACTCGATACATAAAGCAAAAATA 896
Query 895 CCCAAAGCTATTTTGGGTATCAGCAATGGGTCCAATGGTGGTGGTCGTTGTGGGTTGCGT 954
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 897 CCCAAAGCTATTTTGGGTATCAGCAATGGGTCCAATGGTGGTCGTCATTGTGGGTTGCGT 956
Query 955 TGTTGCTTATTTGGTGAAAGGAACAGCACACGGCATTGCTACTGTTGGGCCTTTAAAGAA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGTTGCTTATTTGGTGAAAGGAACAGCACACGGCATTGCTACTGTTGGGCCTTTAAAGAA 1016
Query 1015 AGGACTAAATCCTCCTTCTATTCAACTTTTGAACTTTGACTCCAAGTATCTAGGGATGGT 1074
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AGGACTAAACCCTCCTTCAATTCAACTTTTGAACTTTGACTCCAAGTATCTAGGGATGGT 1076
Query 1075 GTTTAAGGCCGGAATCGTCACAGGACTCATCGCTTTGGCCGAAGGGATAGCAATTGGAAG 1134
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 GTTTAAGGCCGGAATCGTCACTGGACTCATCGCTTTGGCCGAAGGGATAGCGATTGGAAG 1136
Query 1135 AAGCTTTGCTGTAATGAAGAACGAACAAACGGACGGGAACAAAGAGATGATAGCATTTGG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAGCTTTGCTGTAATGAAGAACGAACAAACGGACGGGAACAAAGAGATGATAGCATTTGG 1196
Query 1195 TCTTATGAACGTAATTGGCTCCTTCACTTCTTGCTATTTGACAACGGGGCCATTTTCAAA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TCTTATGAACGTAATTGGCTCCTTCACTTCTTGCTATTTGACAACGGGGCCATTTTCAAA 1256
Query 1255 GACAGCAGTGAACTACAACGCGGGGACAAAGACACCGATGTCGAATGTAGTAATGGGCGT 1314
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1257 GACAGCAGTGAACTACAACGCGGGGACAAAGACACCAATGTCGAATGTAGTGATGGGCGT 1316
Query 1315 TTGCATGATGCTTGTGCTTCTCTTCCTAGCGCCTCTATTCAGCTACACACCATTAGTTGG 1374
||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1317 TTGCATGATGCTTGTACTTCTCTTCCTAGCGCCTCTATTCAGCTACACACCACTGGTTGG 1376
Query 1375 TCTCTCAGCCATCATTATGTCAGCCATGTTGGGTCTCATCAACTACGAGGAGATGTACCA 1434
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCTTTCAGCTATCATTATGTCAGCCATGTTGGGTCTCATCAACTACGAGGAGATGTACCA 1436
Query 1435 TCTCTTCAAGGTTGACAAGTTTGATTTCCTCGTCTGCATGTCCGCCTTTTTCGGTGTTTC 1494
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1437 TCTCTTCAAGGTTGACAAGTTTGATTTCCTCGTCTGCATGTCTGCCTTTTTTGGTGTTTC 1496
Query 1495 ATTCCTTAGCATGGACTACGGTCTCATCATCTCCGTTGGATTTTCTATCGTAAGAGCTTT 1554
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1497 CTTCCTTAGCATGGACTACGGTCTCATCATCTCCGTTGGGTTTTCTATCGTAAGAGCGTT 1556
Query 1555 GTTGTACGTTGCAAGGCCCTCCACTTGTAAATTGGGAAGGATACCAAACTCGGTTATGTT 1614
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1557 GTTGTACGTTGCAAGGCCCTCGACTTGTAAACTGGGAAGGATACCAAACTCGGTTATGTT 1616
Query 1615 TAGAGACATAGAACAGTACCCTGCCTCCGAGGAGATGCTTGGTTATATCATTCTTCAATT 1674
||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||
Sbjct 1617 TAGAGACATAGAACAGTACCCAGCTTCAGAGGAAATGCTTGGTTATATCATTCTTCAATT 1676
Query 1675 AGGCTCTCCAGTCTTTTTTGCCAATAGCACTTACGTCCGTGAACGGATCTTGAGGTGGAT 1734
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1677 AGGCTCTCCCGTCTTTTTTGCCAACAGCACTTACGTCCGTGAACGGATCTTGAGGTGGAT 1736
Query 1735 TCGTGATGAACCTGAAGCCATCGAGTTTCTTCTCCTTGATCTCTCTGGAGTTTCAACCAT 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TCGTGATGAACCTGAAGCCATCGAGTTTCTTCTCCTTGATCTCTCTGGAGTTTCAACCAT 1796
Query 1795 TGACATGACCGGGATGGAAACACTACTCGAAATTCAGAGAATCCTTGGATCAAAAAACAT 1854
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct 1797 TGACATGACCGGGATGGAAACGCTACTCGAAGTTCAGAGAATCCTTGGATCAAAAAGCAT 1856
Query 1855 CAAGATGGTGATAATAAATCCAAGATTTGAAGTCTTGGAAAAGATGATGTTGTCCCATTT 1914
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1857 CAAGATGGTGATAATAAATCCAAGGTTTGAAGTCTTGGAAAAGATGATGTTGTCACATTT 1916
Query 1915 CGTGGAGAAGATAGGAAAAGAGTATATGTTCTTATCGATTGACGATGCAGTTCAAGCATG 1974
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1917 CGTGGACAAGATAGGAAAGGAGTATATGTTCTTATCCATTGACGATGCAGTTCAAGCATG 1976
Query 1975 CCGATTTAATCTTACCACCACCAAGCCGGAAGTGTGACCTTCTTCTTAGTTATTAGTGGG 2034
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1977 CCGATTTAATCTTACCACCACCAAGCCGGAACCGTGACCTTCTTCTTAGTTATTAGTGGG 2036
Query 2035 AAGGTTCTAATAAAATGCGTAATCTTTTCTTTTTT----GTCAATGGAAGTT-AAACTGC 2089
|||||| |||||||||||||| |||||| |||||| |||||||||| || |||||||
Sbjct 2037 AAGGTTATAATAAAATGCGTA-TCTTTTTTTTTTTTTTTGTCAATGGAAATTTAAACTGC 2095
Query 2090 TTA 2092
|||
Sbjct 2096 TTA 2098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86960029335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5