BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19630.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488857 jgi|Araly1|488857|fgenesh2_kg.6__1991__AT5G19630.1 1107 0.0
> Ahg488857 jgi|Araly1|488857|fgenesh2_kg.6__1991__AT5G19630.1
Length=747
Score = 1107 bits (599), Expect = 0.0
Identities = 681/721 (94%), Gaps = 4/721 (1%)
Strand=Plus/Plus
Query 69 ATTCGTCGTCTCTCCTAAAATGTCGTCAAACTTTATAGTGGAATCGTGTAGCGTTGATTC 128
|||| || ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATTCATCATCTTTCCGAAAATGTCGTCAAACTTTACAGTGGAATCGTGTAGCGTTGATTC 60
Query 129 AGAAGAAGGGGTGAAGCTTCACACGAGAATCTTCAAACCCAGAAACGAAGGAGAAGAAGT 188
|| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 61 GGAGGAAGGGGTGAAGCTTCACACGAGAGTCTTCAAGCCCAGAAACGAAGGAGAAGAAGT 120
Query 189 CAGCGACGATGAGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTTG 248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAGCGACGATGGGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTTG 180
Query 249 TCAAGCTCTGCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAGGGTTTCAAGTCTGTCAC 308
||| ||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 181 TCAGGCTCTTCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAGGGTTTAAAGGCTGTCAC 240
Query 309 TTTCGATACGAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGA 368
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTCGATACAAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGA 300
Query 369 GGTCAAGGATGTGGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTG-ATGCTCATAGGA 427
|||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 301 GGTCAAGGATGTCGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGGA-GCTCATAGGA 359
Query 428 TCCTGCTCGTGGGTTCTTCTGCTGGTGCACCAATCGCAGGATCAGCGGTGGAGCAAGTAG 487
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 360 TCCTGCTCGTGGGTTCTTCTGCTGGTGCACCAATCGCAGGATCAGCAGTGGATCAAGTAG 419
Query 488 AGCAAGTGGTGGGATATGTGAGTTTGGGATACCCATTTGGCCTAATGGCCTCGATTCTCT 547
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 420 AGCAAGTGGTGGGATATGTGAGTTTGGGATACCCATTTGGCCTAATGGCCTCCATTCTGT 479
Query 548 TTGGGCGACACCACAAGGCCATTCTCTCATCCCCTAAACCCAAACTCTTCGTAATGGGAA 607
|||| || ||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 480 TTGGACGGCACCACAAGGCCATTCTCTCATCCCCTAAACCCAAGCTCTTTGTTATGGGAA 539
Query 608 CACAAGACGGGTTCACTAGCGTTAGCCAGCTAAAGAAGAAGCTGAAATCTGCAGTCGGAC 667
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 540 CACAAGACGGGTTCACTAGCGTTAGCCAGCTAAAGAAGAAGCTGAAGTCTGCAGTTGGAC 599
Query 668 GCACTGAAACACACCTCATTGAAGGCGTTAGTCATTTCCAGATGGAAGGACCTGAATATG 727
|||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 600 GCACCGATACACACCTCATTGAAGGTGTTAGCCATTTCCAGATGGAAGGACCTGAATATG 659
Query 728 ATTCTCAGGTGACCGATATTATATGTAAATTT-ATTTCATCCCTGTAAAATACCACATGA 786
||||||||||||||||||| |||||||| ||| || |||||| |||||||| |||||||
Sbjct 660 ATTCTCAGGTGACCGATATCATATGTAA-TTTCATATCATCCTTGTAAAATTGCACATGA 718
Query 787 A 787
|
Sbjct 719 A 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5