BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19650.1
Length=666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941515 jgi|Araly1|941515|scaffold_602059.1 1092 0.0
> Ahg941515 jgi|Araly1|941515|scaffold_602059.1
Length=700
Score = 1092 bits (591), Expect = 0.0
Identities = 643/667 (96%), Gaps = 8/667 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAGAATGAAGCTCCGGGTTTCAAGAATAGTCCGGTCATCTTTAAGCTCTTGC 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGAGAAAAAAATGAAGCTCCGGGTTTCAAGAATAGTCCGGTCATCTTTAAGCTCTTGC 80
Query 61 CGACCACGAGATCTATACGACGTCGTCGAGACTTGTGCTGTTACAAGTAAAGCAACGTCT 120
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 81 CGACCACGAGATCTATACGACGTCGTTGAGACTTGTGCTGTTACAAGTCAAGCAACGTCT 140
Query 121 TCCGAGAGGTTCTTCGTTACCAAAGCCAAAACCAAAACTCCATCACGACCAAAGA-GTCA 179
||||||||||||||| ||||| ||||||||||||||||| | |||||||||||| || |
Sbjct 141 TCCGAGAGGTTCTTCCTTACCGAAGCCAAAACCAAAACT-C--CACGACCAAAGAGGT-A 196
Query 180 TGCTTCTTCTTGCCCTCGTGCGTCACCTATATTCCCACCAAACCCTTTCTACGAAGAGAG 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 197 TGCTTCTTCTTGCCCTCGTGCGTCACCGATATTCCCACCAAACCCTTTCTACGAAGAGAG 256
Query 240 CCGTTCATTTCGAGATTTAAGGAAGAAGGTCAAGACAAACAGGAAGCAAAGATCGCAGTT 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 257 CCGTTCATTTCGAGATTTAAGGAAGAAGGTCAAGACAAACAGGAAGCAGAGATCGCAGTT 316
Query 300 TGGTTCTGACCCTCTCTTTGCCTCACGTTTTAAGTCAACCGGGTCTTGGTACTGGTCTTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TGGTTCTGACCCTCTCTTTGCCTCACGTTTTAAGTCAACCGGGTCTTGGTACTGGTCTTG 376
Query 360 TAGTGAGGAAGAAGACGAAGGAGACAAAGAAGAAAGTGAAGATGATGATTCTGATACTCT 419
||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 377 TAGCGAGGAAGAAGACGAAGGAGACAAAGAAGAAAGTG-A-A-GATGATTCTGATACTCT 433
Query 420 CTTTTCTTCTAGAAGCTTCTCCTCGGACTCTTCAAAGGCGGAGAGTTTTGCGGTGGTGAA 479
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 434 CTTTTCTTCTAGAAGCTTCTCCTCGGACTCTTCGAAGGCAGAGAGTTTTGCGGTGGTGAA 493
Query 480 GAAGTCAAAGGATCCATATGAAGATTTCAGGACGTCAATGGTGGAGATGATTGTTGAGAG 539
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GAAGTCAAAGGATCCGTACGAAGATTTCAGGACGTCAATGGTGGAGATGATTGTTGAGAG 553
Query 540 ACAGATATTTGCACCGGCTGAGTTACAACAGCTTCTTCAGTGTTTTTTGTCGTTAAACTC 599
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 554 ACAGATATTTGCAGCGGCTGAGCTACAACAGCTTCTTCAGTGTTTTTTGTCGTTAAACTC 613
Query 600 TCGTCAACACCACAAAGTTATTGTCCAAGTGTTCTTAGAAATTTATGCCACCTTGTTCTC 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 614 TCGTCAACACCACAAAGTTATTGTCCAAGTGTTCTTAGAAATTTATGCTACCTTGTTCTC 673
Query 660 TCCCTAA 666
|||||||
Sbjct 674 TCCCTAA 680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24436789797
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5