BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19670.1
Length=2279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488861 jgi|Araly1|488861|fgenesh2_kg.6__1995__AT5G19670.1 3094 0.0
> Ahg488861 jgi|Araly1|488861|fgenesh2_kg.6__1995__AT5G19670.1
Length=2173
Score = 3094 bits (1675), Expect = 0.0
Identities = 1974/2114 (93%), Gaps = 38/2114 (2%)
Strand=Plus/Plus
Query 42 CTTCACTTGGGTCGGAGTTGTTTTGAAGATTCTACCGTTGGTGCATCTTCATGTCTTTTC 101
|||||||| |||||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 1 CTTCACTTTGGTCGGAGTTGTTTTGAAGATTCTTCCGTCGGTGCATCTCCATGTCTTTTC 60
Query 102 CACTTCAAGAGTTTCAAATTTACTCTGAATTGAGCAACGAATGTTTCCGATTTCCAATTT 161
||||||||| ||||| |||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 61 CACTTCAAGGGTTTC-AATTTACTCTGAATTGAGCAACGAATGTTTTCGGTTTCCAAATT 119
Query 162 AAGATCAAGATCGTTGGAATTTATGTCTTTCCAGCttttttttttGTTCTCGTGAATGTG 221
|||||| |||||||||||| ||||||||||||| |||||||||| || |||||||||||
Sbjct 120 AAGATCGAGATCGTTGGAAATTATGTCTTTCCA--TTTTTTTTTT-TT-TCGTGAATGTG 175
Query 222 TCGGCAGGATTAGTTTTTGAAGCTTGTTGTTAAATACTTGAACTTGAAGGT-TTTGTGGG 280
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 176 TCGGCAGGATAAGTTTTTGAAGCTTGTTGTTAAATACTTGAACTTGAATGTCTTT-TGGG 234
Query 281 TTTGAATCTGTATAGTTCCTTCTGTCATGGAG---GTTAGATCTGAGCTCCGAAAACAGT 337
||||||||||| || |||| || |||||||| |||||||||||||||||||||| |
Sbjct 235 TTTGAATCTGTGTAATTCC-TC--TCATGGAGATTATTAGATCTGAGCTCCGAAAACATT 291
Query 338 CACGAAGTGGAAAGAGGAAATGGGCTATTTTAGTTGGGATTGTGG-CTCTTACTCATATC 396
||||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||
Sbjct 292 CACGAAGTGGAAAGAGGAAATGGGCTATTTTGGTTGGGATTATGGCCT-TTACTCATATC 350
Query 397 TTGTTATTACTTTCATATGGTGACGCCTTAAGATATCTGTTGCCTGATGGTAGAAGACTG 456
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 351 TTGTTGTTACTTTCATATGGTGACGCCTTAAGATATCTTTTGCCTGATGGTAGAAGACTG 410
Query 457 AAACTTCCCAATGAGAACAATGCGTTGTTGATGACTCCATCACGAAACACACTTGCGGTT 516
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 411 AAACTTCCCAATGAGAACAATGC---GTTGATGACTCCATCGCGAAACACACTTGCGGTT 467
Query 517 AACGTTTCTGAGGATTCTGCAGTCTCGGGGATTCATGTCTTGGAGAAAAATGGGTATGTT 576
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 468 AACTTTTCTGAGGATTCTGCAGGCTCGGGGATTCATGTCTTGGAGAAAAATGGGTATGTT 527
Query 577 TCAGGTTTTGGTCTAAGGAATGAGTCTG-AG--GATGATGAAGGGTTTGTTGGAAATGTT 633
|||| ||||||||||||||||||||| | || ||||| |||||||||||||||||||||
Sbjct 528 TCAGATTTTGGTCTAAGGAATGAGTCGGAAGATGATGAAGAAGGGTTTGTTGGAAATGTT 587
Query 634 GATTTTGAGAGCTTTGAAGATGTGAAAGACAGTATCATCATCAAAGAAGTTGCTGGAAGC 693
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 588 GATTTTGAGAGCTTTGAAGATGCAAAAGACAGTATCATCGTCAAAGAAGTTGCTGGAAGC 647
Query 694 AGTGATAATCTTTTTCCTTCAGAGACTACTGTAATGCAAAAGGAGAGTGTTTCAACGAGT 753
||||||| |||||||||| |||||| |||||||||||||| |||| ||||||||| |||
Sbjct 648 AGTGATAGTCTTTTTCCTACAGAGAAGACTGTAATGCAAAATGAGATTGTTTCAACCAGT 707
Query 754 AATAATGGTTATCAGGTGCAAAATGTGA-CGGTTCAAAGTCAGAAGAACGTCAAAAGCTC 812
|||||||| ||||||||||| |||| | ||||||||||||||||||| | || |||||
Sbjct 708 AATAATGGCCATCAGGTGCAATATGT-ATCGGTTCAAAGTCAGAAGAATTTGAAGAGCTC 766
Query 813 TATTTTAAGTGGGGGCTCCTCCATTGCTAGTCCTGCATCTGGAAATAGTTCCTTGCTTGT 872
||| | ||||| ||||||||||| ||| || |||||| |||||||||||||||||||||
Sbjct 767 TATGTCAAGTGCAGGCTCCTCCATAGCTGGTTCTGCATTTGGAAATAGTTCCTTGCTTGT 826
Query 873 TTCTAAGAAAGTAAGTAAGAAGAAGAAAATGCGGTGTGATCTTCCACCAAAATCTGTGAC 932
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TACTAAGAAAGCGAGTAAGAAGAAGAAAATGCGGTGTGATCTTCCACCAAAATCTGTGAC 886
Query 933 AACAATAGATGAGATGAATCGGATATTAGCAAGGCACCGTAGAACTTCACGAGCAATGCG 992
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 887 AACAATAGATGAGATGAATCGGATTTTAGCAAGGCACCGTAGAACTTCACGCGCAATG-G 945
Query 993 -ACCGCGTTGGTCTTCGAGGAGAGATGAGGAGATATTGACTGCAAGGAAGGAGATAGAGA 1051
| | | | | | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TA-TGTG-T-G-C--AGCTGAGAGATGAGGAGATATTGACTGCAAGGAAGGAGATAGAGA 999
Query 1052 ATG---CTCCGGTTGCAA-AACTTGAACGGGAGCTCTACCCTCCAATATTCCGTAATGTT 1107
||| |||| ||||||| || ||||||| | |||||||||||||||||||||||||||
Sbjct 1000 ATGCTCCTCCAGTTGCAACAA-GTGAACGGCAACTCTACCCTCCAATATTCCGTAATGTT 1058
Query 1108 TCCCTGTTTAAAAGGAGTTACGAACTTATGGAACGGATACTCAAAGTTTACGTATATAAG 1167
||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1059 TCCATGTTTAAGAGGAGTTACGAACTTATGGAACGGATACTCAAGGTTTATGTATATAAG 1118
Query 1168 GAAGGGAACCGCCCCATCTTT-CATACTCCGATACTCAAGGGATTGTATGCATCAGAGGG 1226
||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1119 GAAGGAAACCGCCCTAT-TTTCCATACTCCGATACTCAAGGGATTGTATGCATCAGAGGG 1177
Query 1227 ATGGTTCATGAAGTTGATGGAAGGAAACAAGCAGTACACTGTAAAGGACCCAAGAAAGGC 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ATGGTTCATGAAGTTGATGGAAGGAAACAAGCAGTACACTGTAAAGGACCCAAGAAAGGC 1237
Query 1287 TCACTTGTACTATATGCCATTTAGTGCACGGATGCTAGAATACACACTTTATGTGCGTAA 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TCACTTGTACTATATGCCATTTAGTGCACGGATGCTAGAATACACACTTTATGTGCGTAA 1297
Query 1347 TTCTCACAACCGCACTAACCTACGCCAGTTTCTTAAGGAATATACGGAGCACATCAGTTC 1406
|||||||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||
Sbjct 1298 TTCTCACAACCGAACTAATCTGCGCCAGTTTCTTAAGGAATATACAGAGCACATTAGTTC 1357
Query 1407 CAAGTACCCTTTCTTCAATAGAACCGATGGAGCCGATCATTTTCTTGTTGCTTGTCATGA 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 CAAGTACCCTTTCTTCAATAGAACCGATGGAGCCGATCATTTTCTTGTTGCTTGTCATGA 1417
Query 1467 TTGGGCACCATATGAGACTAGGCACCACATGGAGCATTGCATTAAAGCTTTATGCAATGC 1526
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1418 TTGGGCACCATATGAGACTAGGCACCACATGGAGCATTGCATTAAAGCTCTATGCAATGC 1477
Query 1527 AGACGTAACCGCAGGCTTTAAGATTGGAAGAGACATCTCACTCCCTGAAACATATGTCAG 1586
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 1478 AGACGTAACCGCAGGCTTTAAAATTGGAAGAGACATCTCACTCCCTGAAACATACGTCCG 1537
Query 1587 AGCCGCCAAAAATCCGCTTCGTGATTTGGGTGGAAAACCGCCGTCTCAGAGGCGGACCCT 1646
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1538 AGCTGCCAAAAATCCACTTCGTGATTTGGGTGGAAAACCGCCGTCTCAGAGGCGGACTCT 1597
Query 1647 GGCTTTCTATGCTGGAAGCATGCACGGTTACTTACGTCAGATTCTGCTACAGCATTGGAA 1706
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 1598 GGCTTTCTATGCTGGAAGCATGCACGGTTACTTGCGTCAGATTCTACTGCAGCATTGGAA 1657
Query 1707 AGACAAAGACCCGGACATGAAAATCTTCGGGCGAATGCCATTTGGTGTGGCGAGCAAGAT 1766
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 AGACAAAGACCCGGACATAAAAATCTTCGGGCGAATGCCATTTGGTGTGGCGAGCAAGAT 1717
Query 1767 GAATTACATCGAGCAGATGAAAAGCAGCAAGTACTGCATTTGTCCTAAAGGGTACGAAGT 1826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1718 GAATTACATCGAGCAGATGAAAAGCAGCAAGTACTGCATTTGTCCTAAAGGGTACGAGGT 1777
Query 1827 CAACAGCCCGAGGGTGGTTGAATCGATTTTCTATGAGTGTGTCCCTGTGATCATCTCCGA 1886
||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1778 CAACAGCCCAAGGGTGGTTGAATCGATTTTCTATGAGTGTGTCCCTGTGATTATATCCGA 1837
Query 1887 CAACTTTGTGCCACCTTTCTTCGAGGTTCTTGATTGGAGTGCGTTCTCGGTCATTGTTGC 1946
|||||||||||| |||||||| || |||||||| |||||||||||||| |||||||||||
Sbjct 1838 CAACTTTGTGCCGCCTTTCTTTGAAGTTCTTGACTGGAGTGCGTTCTCAGTCATTGTTGC 1897
Query 1947 GGAGAAAGACATCCCGAGGTTGAAAGATATCTTGTTATCAATACCAGAAGACAAATACGT 2006
|||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct 1898 GGAGAAAGACATCCCGAGGTTGAAAGATATCTTGTTGTCGATACCAGAAGAGAAATACTT 1957
Query 2007 GAAGATGCAAATGGCGGTGAGAAAGGCGCAAAGGCACTTTCTGTGGCATGCTAAACCTGA 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GAAGATGCAAATGGCGGTGAGAAAGGCGCAAAGGCACTTTCTGTGGCATGCTAAACCTGA 2017
Query 2067 GAAATATGATCTGTTTCATATGGTTTTGCATTCTATTTGGTATAACAGAGTGTTCCAAGC 2126
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2018 GAAATACGATCTGTTTCATATGGTTTTGCATTCTATTTGGTATAACAGAGTGTTTCAAGC 2077
Query 2127 AAAGCGTAGATGAT 2140
||||||||||||||
Sbjct 2078 AAAGCGTAGATGAT 2091
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2207 TAGCTACAAAGTTGACTCTACCTTTGTAAATATTGACTCATAATTTTGTTCTAATT 2262
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2118 TAGCTATAAAGTTGACTCTACCTTTGTAAATATTGAGTCATAATTTTGTTCTAATT 2173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85817321985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5