BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19680.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488862 jgi|Araly1|488862|fgenesh2_kg.6__1996__AT5G19680.1 2141 0.0
> Ahg488862 jgi|Araly1|488862|fgenesh2_kg.6__1996__AT5G19680.1
Length=1345
Score = 2141 bits (1159), Expect = 0.0
Identities = 1289/1352 (95%), Gaps = 7/1352 (1%)
Strand=Plus/Plus
Query 52 aaaaaCCATGAACAGTGAGAAGGAAGACGAGCCATTGGAAGAGATCGGCGATTCGAATAA 111
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAAGCCATGAACAGTGAGAAGGAAGACGAGCCATTGGAAGAGATCGGCGATTCGAGTAA 60
Query 112 TGTTCTCGATCTCACTAGCTATCAGCTCCACAGTCTCGATACGGTCGAGTTACCGCCGAA 171
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TGTTCTCGATCTCACTAGCTATCAGCTCCACAGTCTCGATACGGTGGAGTTACCGCCGAC 120
Query 172 CCTGATTGAGCTGGACCTTACGGCGAACCGTTTGTCGGGATTGGACTCGAGGATCGCTCA 231
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTGATTGAGCTGGACCTAACGGCGAACCGTTTGTCGGGATTGGACTCGAGGATCGCTCA 180
Query 232 GCTCTCCACGCTTAAGAAGCTTTCTCTCCGCCAAAACCTAATTGATGATTCCGCCGTCGA 291
|||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 181 GCTCTCGACGCTCAAGAAGCTTTCTCTTCGCCAGAACCTAATTGATGATTCCGCCGTCGA 240
Query 292 ACCGTTGTCTCACTGGGACGCCTTGTCCGATCTCGAGGAGTTAGTTCTCAGAGATAACAA 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACCGTTGTCTCACTGGGACGCCTTGTCCGATCTCGAGGAGTTAGTTCTCAGAGACAACAA 300
Query 352 GCTAGCGAAAGTACCAGATGTCAGCATATTCACGAAGCTTTTGGTTTACGACATATCTTT 411
||| || |||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 301 GCTCGCAAAAGTACCAGATATCAACATATTCACGAAGCTTTTGGTTTTCGACATATCTTT 360
Query 412 CAATGAAATCACTTCTTTGGAAGGAATATCCAAGGCCTCTAGCACACTGAAGGAACTCTA 471
||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 361 CAATGAAATCACTTCGTTGGAAGGAACATCCAAGGCATCTAGCACACTGAAGGAACTCTA 420
Query 472 TGTGTCTAAAAATGAAGTTAACAAGATTATGGAGATTGAACACTTACACAACTTGCAGAT 531
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 421 TGTGTCTAAAAATGAAGTTAACAAGATTGTGGAGATCGAACACTTACATAACTTGCAGAT 480
Query 532 TCTTGAACTGGGGTCTAATAGATTGCGGGTGATGGAAAATCTGGAAAACTTCACAAAATT 591
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 TCTTGAACTGGGGTCTAATAGATTGCGGGTAATGGAAAATCTGGAAAACTTCACAAAATT 540
Query 592 AGAAGAACTATGGCTCGGAAGAAACCGTATCAAAGTTGTTAACCTGTGTGGGCTCAAATG 651
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 AGAAGAATTATGGCTCGGAAGAAACCGTATCAAAGTTGTCAACCTGTGTGGGCTCAAATG 600
Query 652 CATAAAAAAGATTAGCTTGCAGAGCAATCGATTGACCTCTATGAAAGGATTTGAGGAATG 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATAAAAAAGATTAGCTTGCAGAGCAATCGATTGACCTCTATGAAAGGATTTGAGGAATG 660
Query 712 TGTTGCTCTTGAAGAGTTATATTTGAGCCATAATGGTATCTCCAAAATGGAAGGCTTGAG 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGTTGCTCTTGAAGAGTTATATTTGAGCCATAATGGTATCTCCAAAATGGAAGGCTTGAG 720
Query 772 TGCATTGGTCAACCTACGGGTATTGGACGTGTCGAACAACAAGCTTACTTCAGTTGATGA 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TGCATTGGTCAACCTACGGGTATTGGACGTGTCGAACAACAAGCTTACTTCAGTTGATGA 780
Query 832 CATTCAGAACCTCACAAAGTTGGAAGATTTGTGGCTTAATGACAACCAGATAGAATCACT 891
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 CATTCAGAACCTCACAAAGTTGGAAGATTTATGGCTTAATGACAACCAGATAGAATCACT 840
Query 892 GGAAGCAATCACAGAAGCTGTTACAGGATCTAAAGAGAAGCTTACCACTATCTACCTCGA 951
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 TGAAGCAATCACAGAAGCTGTTACAGGATCGAAAGAGAAGCTTACCACTATCTACCTCGA 900
Query 952 AAATAACCCTTGTGCCAAGTCTTCTGATTATGTTGCTGCGGTCAGACAAATCTTCCCGAA 1011
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 AAATAACCCTTGTGCCAAGTCTTCTGATTATGTTGCTGTGGTCAGACAAATCTTCCCGAA 960
Query 1012 TGTGGAGCAAATTGATTCTAACTTATTTGCTTAGAGATGGATATATTCCTTGTCGTGCTG 1071
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGTGGAGCAAATAGATTCTAACTTATTTGCTTAGAGATGGATATATTCCTTGTCGTGCTT 1020
Query 1072 TTTGTATGAATGTCTGCTTCCTCATCCCATGGGCATGGGCATCGAATTTAGGAAATCAGG 1131
||| ||||| ||||||||||||||| | | |||||||||||||||| |||||||||||
Sbjct 1021 TTT-TATGAGTGTCTGCTTCCTCATTG-A-GAGCATGGGCATCGAATTCAGGAAATCAGG 1077
Query 1132 TACAACACGGATTCCTCAAAATATACATGTGTCTGCTGTTTATCATAAAGAAGTGCAAAT 1191
|| ||||| |||||||| ||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 1078 TAAAACACAGATTCCTCGAAATATACATGTGTCTGGTGTTCATCATAAAGTAGTGCAAAT 1137
Query 1192 GAGCAAATTAAATCGCTCTCGTCATGGATATTTATTAAAACGTTTTTGAAATTCTAGTGT 1251
|||| ||| ||||| |||||||||||||||||||| |||||||||| ||||||| |||||
Sbjct 1138 GAGCTAATGAAATCACTCTCGTCATGGATATTTATCAAAACGTTTT-GAAATTCAAGTGT 1196
Query 1252 TCCCTTGCAAGTAAACCAATTCTTGTTTTTGGTCTGTAATAGTATGTGGACTGTGTCTGT 1311
| |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||
Sbjct 1197 TTCCTTGCAAGTAAACCAATACTTGTTTTTGGTCTGTAACAGTATGTGGACTTTGTCTGT 1256
Query 1312 AAAAGGGAATCCCCGAGTCTGAAGTTGTCTTTGTTTCAAGTTTCAACCGAGAACACTAAC 1371
|||||||||||||||||| ||| || ||||||||| |||||||||||| | | ||||||
Sbjct 1257 AAAAGGGAATCCCCGAGTTTGAGGTGGTCTTTGTTCCAAGTTTCAACC-A-A-CACTAAT 1313
Query 1372 TTGAATACTTTGATCCATATTTTTGACTTTGC 1403
|||||||||||||| |||||||||||||||||
Sbjct 1314 TTGAATACTTTGATTCATATTTTTGACTTTGC 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5