BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19700.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941520 jgi|Araly1|941520|scaffold_602064.1 2412 0.0
Ahg495276 jgi|Araly1|495276|fgenesh2_kg.8__1092__AT5G52050.1 62.1 1e-08
> Ahg941520 jgi|Araly1|941520|scaffold_602064.1
Length=1565
Score = 2412 bits (1306), Expect = 0.0
Identities = 1455/1528 (95%), Gaps = 5/1528 (0%)
Strand=Plus/Plus
Query 1 ATGGAAACCCCAAACATCATCAGCCACACAAATCTTCTATCGAAGATAGACCTGGAAAAA 60
||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 22 ATGGAAACCCCAAACGTCACCAGCCACACAAATCTTCTATCAAAGATAGACCTAGAAAAG 81
Query 61 CAAAACCCTGCCCCCATTTTCCCGACAATCACTGAGCTTAAAAGTGAGGCTAGGTCTCTC 120
|||| |||||||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct 82 CAAAGCCCTGCCCCCATTTTCCCGACAATCACTGAGCTTAAAACAGAAGCCAAGTCTCTC 141
Query 121 TTCTCCTTAGCCTTCCCGACAATCCTCGCGGCCCTCATCCTCTACGCTCGCTCCGCCATC 180
||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 142 TTCTCCTTAGCCTTCCCGACAATACTTGCCGCCCTCATCCTCTACGCTCGCTCCGCCATC 201
Query 181 TCGATGCTCTTCCTCGGGCATATCGGTGAACTAGAGCTAGCTGGTGGCTCCCTGGCCATT 240
||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 202 TCGATGCTCTTCCTCGGTCATCTCGGTGAACTAGAGCTCGCTGGTGGCTCCCTGGCCATT 261
Query 241 GCCTTCGCTAACATCACTGGCTACTCCGTTCTAGCAGGTCTTGCACTCGGCATGGACCCA 300
||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 262 GCCTTTGCTAACATCACTGGCTACTCCGTTCTCGCAGGCCTTGCACTCGGTATGGACCCA 321
Query 301 CTCTGTTCGCAAGCCTTTGGAGCCGGCAGACCAAAACTCCTCTCTTTAACGCTTCAACGA 360
|||||||||||||||||||||||||| | |||||||||||||||| |||| || ||||||
Sbjct 322 CTCTGTTCGCAAGCCTTTGGAGCCGGAAAACCAAAACTCCTCTCTCTAACTCTCCAACGA 381
Query 361 ACCGTACTTTTCTTACTCACAAGTTCGGTAGTAATCGTCGCTCTATGGCTCAACCTGGGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 ACCGTACTTTTCTTACTCACAAGTTCGGTAGTAATCGTCGCTCTATGGCTCAACCTGGGG 441
Query 421 AAGATCATGATTTATCTTCATCAAGATCCAAGTATCTCATCGTTGGCCCAAACATATATC 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AAGATCATGATCTATCTTCATCAAGATCCAAGTATCTCATCGTTGGCCCAAACATATATT 501
Query 481 CTCTGCTCTATTCCTGATCTGCTCACCAATTCCTTTCTTCACCCTCTTCGTATATACCTT 540
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 502 CTCTGCTCTATTCCTGATTTGCTCACCAATTCGTTTCTTCACCCTCTTCGTATATACCTT 561
Query 541 CGAGCACAAGGTATCACAAGCCCTTTAACTCTCGCAACACTCGCTGGCACCATCTTCCAC 600
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 562 AGAGCACAAGGTATCACAAGCCCTTTAACTCTCGCTACACTCGCTGGCACCATCTTCCAC 621
Query 601 ATACCCATGAACTTTTTCCTCGTTTCTTACCTCGGATGGGGTTTCATGGGCGTTTCAATG 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 622 ATACCCATGAACTTTTTCCTCGTTTCTTACCTCGGATGGGGTTTCATGGGAGTTTCAATG 681
Query 661 GCCGCAGCCGCTTCAAATCTTCTTGTTGTCATTTTCCTTGTGGCCCATGTTTGGATCGCA 720
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 682 GCCGCAGCCGCTTCAAATCTTTTTGTTGTCATTTTCCTTGTGGCCCATGTTTGGATCGCA 741
Query 721 GGTCTACACCAGCCAACGTGGACCCGCCCCAGCTCGGAATGTTTCAAAGATTGGGGACCA 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 742 GGTCTACACCAGCCAACGTGGACCCGCCCCAGCTCCGAATGTTTCAAAGATTGGGGACCA 801
Query 781 GTCGTAACCCTAGCCATACCTAGCTGCATCGGGGTATGCCTAGAGTGGTGGTGGTACGAG 840
| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 802 CTGGTAAGTCTAGCCATACCTAGCTGCGTCGGGGTATGCCTAGAGTGGTGGTGGTACGAG 861
Query 841 ATAATGACCGTTCTATGTGGTTTACTCATAGACCCTAGTACTCCAGTGGCATCAATGGGC 900
|| |||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||
Sbjct 862 ATCATGACCGTTCTATGTGGTTTGCTCATAAACCCTAGTACTCCTGTGGCAGCAATGGGC 921
Query 901 ATTCTTATCCAAACGACGTCTTTGCTTTACATTTTCCCATCGTCTCTAGGGTTAGCAGTC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 922 ATTCTTATCCAAACGACGTCTTTGCTTTACATTTTCCCATCGTCTCTAGGGTTTGCGGTC 981
Query 961 TCCACCCGAGTTGGTAACGAACTTGGCTCAAACCGCCCAAACAAGGCTAGGTTATCAGCC 1020
|||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 982 TCCACCCGCGTTGGTAACGAACTTGGGTCAAACCGCCCAAACACGGCTAGGTTATCAGCC 1041
Query 1021 ATAGTGGCGGTTTCCTTTGCTGGGGTAATGGGTCTGACGGCGTCTGCGTTTGCTTGGGGC 1080
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1042 ATAGTGGCGGTTTCCTTTGCTGGGGTAATGGGTATGACGGCCTCTGCGTTTGCTTGGGGC 1101
Query 1081 GTAAGCGATGTCTGGGGATGGATCTTCACAAACGACGTTGCTATCATCAAATTAACCGCA 1140
|||||||| ||||||||| ||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 1102 GTAAGCGACGTCTGGGGACGGATCTTCACAAACGACATTGATATCATCCAATTAACCGCA 1161
Query 1141 GCCGCGTTGCCGATTCTCGGGCTTTGCGAGCTCGGGAACTGCCCGCAAACAGTAGGTTGC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GCCGCGTTGCCGATTCTCGGGCTTTGCGAGCTCGGGAACTGCCCGCAAACAGTAGGTTGC 1221
Query 1201 GGGGTTGTTAGAGGCACTGCACGGCCGTCCATGGCAGCGAACATAAACCTAGGAGCGTTT 1260
|||||||| |||||||| ||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1222 GGGGTTGTAAGAGGCACCGCACGGCCGTCTAAGGCCGCGAACATAAACCTAGGAGCGTTT 1281
Query 1261 TACCTCGTTGGAACGCCTGTAGCCGTTGGGCTAACGTTTTGGGCCGCATATGGATTTTGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 TACCTCGTTGGAACGCCTGTAGCCGTTGGGCTAACGTTTTGGGCCGCATATGGATTTTGC 1341
Query 1321 GGACTTTGGGTAGGTCTTTTAGCTGCTCAGATATGTTGTGCTGCCATGATGCTATATGTC 1380
||||||||| |||||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1342 GGACTTTGGTTAGGTCTTTTCGCGGCCCAGATATGTTGTGCTGCCATGATGCTATATGTC 1401
Query 1381 GTGGCTACTACGGACTGGGAGAAAGAAGCA-ATTAGAGCCAGAAAGCTAACGTGTACTGA 1439
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1402 GTGGCTACTACGGACTGGGAGAAAGAAGCAGAT-AGAGCCAGAAAGCTAACGTGCACTGA 1460
Query 1440 AGGCGTTGATGTGGTAATAACAACAACGCAAACCAACGGAGACTTATCGGAACCATTAAT 1499
||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 1461 AGGCGTTGATGTGGTAATAACAACA-C--AAACAAACGGAGACTTATCGGAACCATTAAT 1517
Query 1500 TTACGTTGTCACTGTCGCTACTGACTGA 1527
||||||||||||||||||||||||||||
Sbjct 1518 TTACGTTGTCACTGTCGCTACTGACTGA 1545
> Ahg495276 jgi|Araly1|495276|fgenesh2_kg.8__1092__AT5G52050.1
Length=1755
Score = 62.1 bits (33), Expect = 1e-08
Identities = 48/55 (87%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 1162 CTTTGCGAGCTCGGGAACTGCCCGCAAAC-AGTAGGTTGCGGGGTTGTTAGAGGC 1215
||||||||||||||||||||||||||||| | || ||||| ||| ||||||||
Sbjct 1224 CTTTGCGAGCTCGGGAACTGCCCGCAAACTACC-GGATGCGGTGTTCTTAGAGGC 1277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5