BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19710.1
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893902 jgi|Araly1|893902|Al_scaffold_0006_1898 401 1e-111
> Ahg893902 jgi|Araly1|893902|Al_scaffold_0006_1898
Length=453
Score = 401 bits (217), Expect = 1e-111
Identities = 266/289 (92%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 61 GGAGCGAGAGCCAATAGAGGTACCCATGATTACCCGATGCATTCTTCGGCTAGAAAGCAG 120
||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 166 GGAGCGAGATCCAATAGAGGTACCCATGATTACCAAATGCATTCTTCAGTTAGAAAGCAG 225
Query 121 CAGCGCCAGGCTAGTTATAATATTTTTGTAAT---CATCGGTGCTATCAAAGTTGTTAAG 177
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 226 CAGCGCCAGGCTAGTTATAATATTTTTGTAATTTGCATCGGTGCTAGCAAAGTTTTTAAG 285
Query 178 GAACTTAAGAAGGCAAACACATTTCTCAAAGCTGGCAACATAGAAGGAGTAAAAGGAGCA 237
|||||| ||||||||||||||| ||||||||| |||||| ||||||| |||||| ||||
Sbjct 286 GAACTTCAGAAGGCAAACACATCACTCAAAGCTAGCAACACAGAAGGAATAAAAGTAGCA 345
Query 238 CT-GCCTGATATTAAGAAAGAGCACAGTGAACTCCGGGCAAAGTTTGAGACTTATTTCCA 296
|| | |||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 346 CTAGG-TGATATTAAGAAAGAGCACAGTAAACTCCGCGCAAAGTTTGAGACTTATTTCCA 404
Query 297 GTTGATGAGACAAGCTGGTCCAACAGATGTAGCTGTGAATTCAAGCTGA 345
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 405 GTTGATGAGACAAGCTGGCCCAACAGATGTAGCTGTGAATTCAAGCTGA 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12247944069
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5