BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19710.1 Length=345 Score E Sequences producing significant alignments: (Bits) Value Ahg893902 jgi|Araly1|893902|Al_scaffold_0006_1898 401 1e-111 > Ahg893902 jgi|Araly1|893902|Al_scaffold_0006_1898 Length=453 Score = 401 bits (217), Expect = 1e-111 Identities = 266/289 (92%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 61 GGAGCGAGAGCCAATAGAGGTACCCATGATTACCCGATGCATTCTTCGGCTAGAAAGCAG 120 ||||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||| Sbjct 166 GGAGCGAGATCCAATAGAGGTACCCATGATTACCAAATGCATTCTTCAGTTAGAAAGCAG 225 Query 121 CAGCGCCAGGCTAGTTATAATATTTTTGTAAT---CATCGGTGCTATCAAAGTTGTTAAG 177 |||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 226 CAGCGCCAGGCTAGTTATAATATTTTTGTAATTTGCATCGGTGCTAGCAAAGTTTTTAAG 285 Query 178 GAACTTAAGAAGGCAAACACATTTCTCAAAGCTGGCAACATAGAAGGAGTAAAAGGAGCA 237 |||||| ||||||||||||||| ||||||||| |||||| ||||||| |||||| |||| Sbjct 286 GAACTTCAGAAGGCAAACACATCACTCAAAGCTAGCAACACAGAAGGAATAAAAGTAGCA 345 Query 238 CT-GCCTGATATTAAGAAAGAGCACAGTGAACTCCGGGCAAAGTTTGAGACTTATTTCCA 296 || | |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 346 CTAGG-TGATATTAAGAAAGAGCACAGTAAACTCCGCGCAAAGTTTGAGACTTATTTCCA 404 Query 297 GTTGATGAGACAAGCTGGTCCAACAGATGTAGCTGTGAATTCAAGCTGA 345 |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 405 GTTGATGAGACAAGCTGGCCCAACAGATGTAGCTGTGAATTCAAGCTGA 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12247944069 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5