BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19730.1
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488866 jgi|Araly1|488866|fgenesh2_kg.6__2000__AT5G19730.1 2065 0.0
> Ahg488866 jgi|Araly1|488866|fgenesh2_kg.6__2000__AT5G19730.1
Length=1356
Score = 2065 bits (1118), Expect = 0.0
Identities = 1282/1358 (94%), Gaps = 24/1358 (2%)
Strand=Plus/Plus
Query 1 AGCCATATAtttttttGGTCGTACTTTGTATCTTTGGcaaa-ac-acaaaaaacaaaaac 58
||||||||||| |||||||| ||||||||| |||||||||| || |||||||||||||||
Sbjct 1 AGCCATATATTGTTTTGGTCCTACTTTGTAACTTTGGCAAACACAACAAAAAACAAAAAC 60
Query 59 -----aaaaaaaCTCCTTATAT-TTTTGTATTTGATGCTAATTGTCGTATAGATGCCCAA 112
||||||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 61 AGAAAAAAAAAACTCCTTAT-TCTTTTGTATTTGATTCTAATTGTCGTATAGATGCCCAA 119
Query 113 ACTCAATTCAACCCAAGCTCCCAATTTA-----T-TCC-T-T-CTCCTTCTCGTTATCCT 163
| |||||||||||||||||||||||||| | ||| | | |||||||||||||||||
Sbjct 120 ATTCAATTCAACCCAAGCTCCCAATTTATTTCTTCTCCTTCTCCTCCTTCTCGTTATCCT 179
Query 164 TCTTTGTTCAACGCAAACACAATGCCACACCAAAGGTCTCCGATTACGACCAAGAAACCA 223
||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TCTGTGTTCAACGCAAACAAAATGCCACACCAAAGGTCTACGATTACGACCAAGAAACCA 239
Query 224 GAAGAATATGAACACGACGAGTGATCGGACACAAAACCCGGAAGATGAGTTCATGAAATG 283
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAGAATGTGAACACGACGAGCGATCGGACACAAAACCCGGAAGATGAGTTCATGAAATG 299
Query 284 GGTGAGATTCGTTGGAAGCCTTAAACACTCAGTGTTCAAGGCAGCCAAGAACAAACTCTT 343
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGTAAGATTCGTTGGAAGCCTTAAACACTCAGTGTTCAAGGCAGCCAAGAACAAACTCTT 359
Query 344 CCCTTCTTATACATTAACTGTCCACAAGAAATCCAATAAAGGTGACTTCACTAAAATCCA 403
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCCTTCTTATACACTAACTGTCCACAAGAAATCCAATAAAGGTGACTTCACTAAAATCCA 419
Query 404 AGACGCCATTGATTCTCTCCCTCTCATCAACTTTGTTCGTGTCGTCATCAAAGTTCATGC 463
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 AGACGCCATTGATTCTCTCCCTCTCATCAACTTTGTTCGTGTCGTCATCAAAGTCCATGC 479
Query 464 CGGAGTTTACAAGGAGAAGGTGAGCATACCCCCACTGAAGGCATTTATAACAATAGAAGG 523
||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 480 CGGAGTTTACAAGGAGAAGGTGAACATACCCCCAATGAAGGCATTCATAACAATAGAAGG 539
Query 524 AGAAGGAGCAGAGAAGACAACAGTGGAATGGGGAGACACAGCACAAACCCCTGACTCAAA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGAAGGAGCAGAGAAGACAACAGTGGAATGGGGAGACACAGCACAAACCCCTGACTCAAA 599
Query 584 AGGCAACCCCATGGGCACTTACAACTCGGCCTCGTTCGCGGTCAACTCTCCTTTCTTTGT 643
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 600 AGGCAACCCCATGGGCACTTACAACTCGGCCTCCTTCGCCGTCAACTCTCCTTTCTTTGT 659
Query 644 CGCTAAGAATATCACATTCAGGAACACGACCCCAGTCCCCTTGCCCGGTGCAGTTGGTAA 703
||||||||| ||||| |||| ||| ||||||||||||||||| || || |||||||| ||
Sbjct 660 CGCTAAGAACATCACTTTCAAGAATACGACCCCAGTCCCCTTACCGGGCGCAGTTGGAAA 719
Query 704 ACAGGCGGTAGCATTGAGGGTGTCGGCAGACAATGCCGCGTTTTTTGGGTGTAGAATGCT 763
||||||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 720 ACAGGCGGTGGCATTGAGAGTTTCGGCAGACAATGCCGCATTTTTCGGGTGTAGAATGCT 779
Query 764 TGGTGCTCAAGACACTCTCTATGACCATTTGGGAAGACATTATTACAAAGATTGTTACAT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGGTGCTCAAGACACTCTCTATGACCATTTGGGAAGACATTATTACAAAGATTGTTACAT 839
Query 824 TGAGGGATCAGTGGACTTCATCTTTGGAAATGCCCTTTCTCTTTATGAAGGGTGCCACGT 883
|||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 840 TGAGGGATCAGTTGACTTCATCTTTGGCAATGCCCTTTCTCTGTATGAGGGGTGTCACGT 899
Query 884 GCATGCGATAGCGGATAAGCTAGGAGCAGTGACGGCACAGGGGAGGAGCAGTGTTCTAGA 943
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 900 GCACGCGATAGCGGATAAGCTAGGAGCAGTGACGGCACAGGGAAGGAGCAGTGTGCTAGA 959
Query 944 GGACACCGGATTCTCGTTCGTAAAGTGTAAGGTGACAGGGACAGGGGTTTTGTATCTTGG 1003
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 960 GGACACCGGATTCTCTTTCGTAAAATGTAAGGTGACAGGGACAGGGGTTTTATATCTTGG 1019
Query 1004 GAGGGCATGGGGTCCCTTCTCAAGAGTCGTTTTTGCTTACACTTACATGGACAACATCAT 1063
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1020 GAGGGCATGGGGTCCCTTCTCAAGAGTCGTCTTTGCTTACACTTATATGGACAACATCAT 1079
Query 1064 CCTCCCTAGAGGCTGGTACAATTGGGGAGACCCTTCCCGTGAGATGACGGTGTTCTATGG 1123
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 1080 CCTCCCTAGAGGCTGGTACAATTGGGGCGACCCTTCACGCGAGATGACGGTGTTCTATGG 1139
Query 1124 GCAGTACAAGTGCACGGGAGCAGGAGCAAACTATGGAGGGAGGGTGGCTTGGGCAAGAGA 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCAGTACAAGTGCACGGGAGCAGGAGCAAACTATGGAGGGAGGGTGGCTTGGGCAAGAGA 1199
Query 1184 GCTCACCGACGAAGAAGCTAAGCCTTTTCTTTCTCTTACCTTTATCGACGGCTCTGAATG 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GCTCACCGACGAAGAAGCTAAGCCTTTTCTTTCTCTTACCTTTATCGACGGCTCTGAATG 1259
Query 1244 GATCAAACTCTAACCATATACACCtttttttAT--TTTC--TTT-CCACCTAATTAATAA 1298
||||||||||||||||| ||||||||||||| | ||| ||| |||||||||||||||
Sbjct 1260 GATCAAACTCTAACCAT-TACACCTTTTTTTGTCGTTTTAATTTTCCACCTAATTAATAA 1318
Query 1299 TGTACATTTTCCCTTTAATAAAATAAAAATAATTTTTT 1336
||| ||||||||| ||||||||||||||| ||||||||
Sbjct 1319 TGTTCATTTTCCCCTTAATAAAATAAAAACAATTTTTT 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49979144187
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5