BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19740.1
Length=2191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488867 jgi|Araly1|488867|fgenesh2_kg.6__2001__AT5G19740.1 3171 0.0
Ahg485877 jgi|Araly1|485877|fgenesh2_kg.5__1869__AT3G54720.1 126 6e-28
> Ahg488867 jgi|Araly1|488867|fgenesh2_kg.6__2001__AT5G19740.1
Length=2117
Score = 3171 bits (1717), Expect = 0.0
Identities = 1964/2083 (94%), Gaps = 17/2083 (1%)
Strand=Plus/Plus
Query 27 ATGATTATCTAAGAAGAAGCCCCATTGATGTCGAAATCAAAATCTCTAGCCTTCGTAATC 86
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || ||
Sbjct 3 ATGATTATCTAAGAAGAAGCTCCATTGATGTCGAAATCAAAACCTCTAGCCTTCATAGTC 62
Query 87 GCTGCTTTATCTTACTCCTTCTTCTCCCTCTTCTCTTCTCCACCAAAGTCTCACTACCAC 146
||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||
Sbjct 63 GCTGCTTTATCTTACTCCTTC-T-T-CCTCTTCTCTTCTTCACCAAAGTCTCACTACCAC 119
Query 147 GAGCTCTTCATCTC-CACTTCCTTCTCCGACAACGCTTCCGTCGCTCTAAACCTCCACAC 205
||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 120 GAGCTCTTCCTCTCTGA-TTCCTTCTCCGACAACGCTTCCGTCGCTCTAAACCTCCGTAC 178
Query 206 CCTCACGCGCCGCCCTCATGTAGCCGGTACAGTGGCCAACGCTGAAGCAGCGGAATATGT 265
||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 179 CCTCACGCGCCGCCCTCATGTAGCCGGTACAGTAGCCAACGCTGAAGCAGCCGCATATGT 238
Query 266 TCGCTCTGTTTTCACCTCCTCTGCTCTCAAATCACACGTCGTTGCTTACCAAGTGTCTCT 325
||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||
Sbjct 239 TCGCTCTGTTTTCACCTCCTCTGCTCTCAAATCACACGTTGTTACTTACCAAGTATCTCT 298
Query 326 AACTTACCCAGTTCATCGCTCTTTGGTACTAACGCCGACAGACTCTGCAAAGCCAATCAC 385
|||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||
Sbjct 299 AACTTACCCAGTTCATCGCTCTTTGGTACTAACGCCCACAGAATCCGCAAAGCCGATCAC 358
Query 386 TTTCTTGCTGGAACAAGAA-AAACTCGGAGACAATCCTTATGCTAATGAAGTGATGCCTA 444
||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 359 TTTCTTGCTGGAACAAGAACAAGC-CGGAGACAATCCTTATGCTAATGAAGTGATGCCTA 417
Query 445 CTTTTCATGGATACGCTAAGTCAGGTAACGTTTCAGGTCCAGTGGTTTATGCAAACTATG 504
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 CTTTTCATGGATACGCTAAGTCAGGTAATGTTTCAGGTCCAGTGGTTTATGCAAACTATG 477
Query 505 GACGAGTGGAAGATTTCGTGAGACTCAAGAAAGATATGGGCGTGAATGTCTCTGGAGCCG 564
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 478 GACGAGTGGAAGATTTCTTGAGACTCAAGAAAGATATGGGTGTGAATGTCTCTGGAGCTG 537
Query 565 TTGTAATCGCGAGGTACGGTCAGATATACAGAGGAGACATTGTGAAGAACGCTTACGAGG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGTAATCGCGAGGTACGGTCAGATATACAGAGGAGACATTGTGAAGAACGCTTACGAGG 597
Query 625 CAGGAGCTGTAGGGGTTGTGATATATACTGATAAGAGAGATTACGGCGGAGATGAGTGGT 684
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGGAGCTGTAGGTGTTGTGATATATACTGATAAGAGAGATTACGGCGGAGATGAGTGGT 657
Query 685 TTCCGGCGAGTAAATGGATGCCACCGAGTGGGGTTCAAGTTGGTACTGTTTATAATGGGT 744
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 658 TTCCGGCTAGTAAATGGATGCCACCGAGTGGGGTTCAGGTTGGTACTGTTTATAACGGGT 717
Query 745 TAGGTGATCCAACGACTCCTGGATGGGCAAGTGTTGATGGGTGTGAGAGATTATCGGACG 804
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 718 TAGGTGATCCAACGACTCCTGGGTGGGCAAGTGTTGATGGGTGTGAGAGATTGTCGGATG 777
Query 805 AGGCGGTTGAATTGAGCGGTGATGTTCCGCTTATACCGTCGTTGCCTGTCTCAGCTGCTG 864
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 778 AGGCGGTTGAATTGAGCGGTGATGTTCCGCTTATACCGTCGTTGCCTGTCTCGGCTGCTG 837
Query 865 ATGCTGAAGTGATTCTGAAGACAGTTGTTGGAGATGTTTCTGATGGAGATGTTTATCCAG 924
|||| ||||||||| ||||||| ||||| ||||||||| |||||||||| |||||||||
Sbjct 838 ATGCAGAAGTGATTTTGAAGACGGTTGTCGGAGATGTTGGTGATGGAGATATTTATCCAG 897
Query 925 TGGGGCCTGGACCTGGGGTCTTGAACCTCAGCTACATTGGGGAAACTGTTATTGCCAAGA 984
|||||||||||||||| |||||||||| || || | ||||||||||||||| ||| |||
Sbjct 898 TGGGGCCTGGACCTGGAATCTTGAACCTGAGTTATACTGGGGAAACTGTTATAGCCCAGA 957
Query 985 TTGAGAATGTTATTGGAGTGATTGAAGGAGAAGAAGAGCCTGATAGATATGTGATTCTTG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TTGAGAATGTTATTGGAGTGATTGAAGGAGAAGAAGAGCCTGATAGATATGTGATTCTTG 1017
Query 1045 GGAACCATAGAGACGCTTGGACTTTTGGAGCTGTTGATCCGAACAGTGGCACTGCGGTAC 1104
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1018 GGAGCCATAGAGACGCTTGGACTTTTGGAGCTGTTGACCCGAACAGTGGCACTGCGGTAC 1077
Query 1105 TTATGGAGATTGCACAAAGACTAGATAAGCTGCAGAAAAGAGGATGGAAGCCTCGAAGGA 1164
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1078 TTTTGGAGATTGCACAAAGACTAGATAAGCTGCAGAAAAGAGGATGGAAGCCTCGACGGA 1137
Query 1165 CGATTATTCTGTGTAATTGGGATGCTGAGGAGTATGGCCTGATTGGGTCAACAGAATGGG 1224
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CGATTATTCTGTGCAATTGGGATGCTGAGGAGTATGGCCTGATTGGGTCAACAGAATGGG 1197
Query 1225 TAGAAGAAAATAGAGAGATGTTAAGTTCGAGAGCAGTGGCCTACTTGAATGTAGATTGTG 1284
|||||||||| ||||||||| ||| || ||||||||||||||| |||||||||||||||
Sbjct 1198 TAGAAGAAAACAGAGAGATGCTAACATCAAGAGCAGTGGCCTACCTGAATGTAGATTGTG 1257
Query 1285 CGGTATCTGGCCCTGGATTTCATGCCTCTGCGACTCCACAACTAGATGAATTGATCAAAG 1344
||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 1258 CGGTATCTGGCCCCGGATTTCATGCCTCAGCAACTCCACAACTCGATGAATTGATAAAAA 1317
Query 1345 TAGCTGCTCAAGAGGTCCGGGATCCAGATAACGCAACGCAAACAATCTATGAATCGTGGA 1404
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1318 TAGCTGCTCAAGAGGTCCGGGATCCAGATAACGCAGCGCAAACAATCTATGATTCGTGGA 1377
Query 1405 TAGGATCAAGCGACTCTGTTGTAATCAGG-AGATTAGGGGGCGGAGGTTCGGATTATGCA 1463
|||||||||| |||||||||| ||| || |||||||||||||||||||||||||| |||
Sbjct 1378 TAGGATCAAGTAACTCTGTTGTGATC-GGAAGATTAGGGGGCGGAGGTTCGGATTACGCA 1436
Query 1464 TCATTTGTACAACATGTTGGTGTTCCAGGAGTTGACATGTCCTTTGGACGAGGCTATCCA 1523
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1437 TCATTTGTACAACATGTTGGCGTTCCAGGAGTTGACATGTCCTTTGGAGGAGGCTATCCA 1496
Query 1524 GTATATCACTCTATGTATGATGACTTCACTTGGATGGAAAAGTTTGGTGATCCGATGTTT 1583
|| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 1497 GTCTATCACTCTATGTATGATGACTTCACTTGGATGGAAAAATTTGGAGACCCTATGTTT 1556
Query 1584 CAGCGACATGTCGCAATGGCTAGTGTTCTTGGTTTGGTCGCTCTTCGGTTAGCAGATGAG 1643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1557 CAGCGACATGTCGCAATGGCTAGTGTTCTTGGTTTGGTCGCTCTTCGGTTAGCAGACGAG 1616
Query 1644 GAAAT-TATACCATTCAACTATACTTCCTATGCATTAGAACTCAAGAAAAGCGCGGAAGA 1702
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1617 GAAATCT-TACCATTCAACTATACTTCCTATGCACTAGAACTCAAGAAAAGCGCGGAAGA 1675
Query 1703 TTTGGAGAATGAGAAGTTAGGACATAACATAGATGTTTCTACGTTGATCAAGTCGATAGA 1762
||||||||||||||||||||| ||||||||| |||| | | | ||||| || ||||| ||
Sbjct 1676 TTTGGAGAATGAGAAGTTAGGCCATAACATATATGTATATCCATTGATAAAATCGATCGA 1735
Query 1763 AGATCTATCTACGGCTGCAAAACATATATCCCTAGAGAAAGAGGCAATTAAAGGAGCTCT 1822
||||||||||||||||||| || ||||| | |||||||||||||| ||||||||||| |
Sbjct 1736 AGATCTATCTACGGCTGCACAATATATAAACATAGAGAAAGAGGCAGTTAAAGGAGCTTT 1795
Query 1823 TAAAGTGAGAGAGCTTAATGACAGATTAATGATGGCAGAACGAGCTTTAACAGACCGAGA 1882
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1796 TAAAGTGAGAGAGCTTAATGACAGATTAATGATGGCGGAACGAGCTTTAACAGACCGAGA 1855
Query 1883 TGGACTCTCTGAAAGACCATGGTACAAGCATTTGATATACGGACCATCGAAGTACGATGA 1942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TGGACTCTCTGAAAGACCATGGTACAAGCATTTGATATACGGACCATCGAAGTACGATGA 1915
Query 1943 CTACGG--A----TCGAAATCATTCCCTGGAGTTGATGATGCAATTGACAATGCAAAGAA 1996
|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1916 CTACGGTTACGGATCGAAATCATTCCCTGGAGTTGATGATGCAGTTGACAATGCAAAGAA 1975
Query 1997 GCTAAACACAAAAGCATCTTGGGAAAATGTTCAACACCAGATTTGGAGAGTCTCTAGAGC 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GCTAAACACAAAAGCATCTTGGGAAAATGTTCAACACCAGATTTGGAGAGTCTCTAGAGC 2035
Query 2057 TATTAGACATGCTTCACTTGTTTTAAAAGGTGAACTGATATGA 2099
||| ||||| || |||||||| |||||||||||||||| ||||
Sbjct 2036 TATAAGACAAGCATCACTTGTCTTAAAAGGTGAACTGAGATGA 2078
Score = 62.1 bits (33), Expect = 2e-08
Identities = 37/39 (95%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 2117 TTGCTTCAGCACAATGATGTGAACATAATGAAGGCAGAT 2155
|||| |||||||||||||||||||||||||||| |||||
Sbjct 2079 TTGCATCAGCACAATGATGTGAACATAATGAAGACAGAT 2117
> Ahg485877 jgi|Araly1|485877|fgenesh2_kg.5__1869__AT3G54720.1
Length=2253
Score = 126 bits (68), Expect = 6e-28
Identities = 200/263 (76%), Gaps = 12/263 (5%)
Strand=Plus/Plus
Query 1032 TATGTGATTCTTGGGAACCATAGAGACGCTTGGACTTTTGGAGCTGTTGATCCGAACAGT 1091
||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||
Sbjct 1067 TATGTGATTCTTGGGAACCATAGAGACGCATGGACATATGGAGCTGTTGATCCAAACAGT 1126
Query 1092 GGCACTGCGGTACTTA-TGGAGATT-GCACAAAGACTAGATAAGCTGCAGAAAAGAGGAT 1149
|| ||| | | | ||| | || ||| || | | || | | | | ||| ||| || |
Sbjct 1127 GGAACTTCTGCA-TTACTTGACATTAGC-CGACGATTCGCTCTGTTGCTTAAATCTGGTT 1184
Query 1150 GGA-AGCCTCGAAGGACGATTATTCTGTGTAATTGGGATGCTGAGGAGTAT-GGCCTGAT 1207
||| | || || ||||| ||| | || |||| ||||||||| || || | | || ||||
Sbjct 1185 GGAGA-CCACGTAGGACCATTCTCCTTTGTAGTTGGGATGCAGAAGAAT-TCGGAATGAT 1242
Query 1208 TGGGTCAACAGAATGGGTAGAAGAAAATAGAGAG-ATGTTAAGTTCGAGAGCAGTGGCCT 1266
||| ||||| |||||||| ||||||||| | | ||| || | || || ||||| |
Sbjct 1243 TGGATCAACTGAATGGGTTGAAGAAAAT-GTTCTTAACTTAGGTGCAAGTGCTGTGGCTT 1301
Query 1267 A-CTTGAATGTAGATTGTGCGGT 1288
| ||| |||||||||||||||||
Sbjct 1302 ATCTT-AATGTAGATTGTGCGGT 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82465380425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5