BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19740.1 Length=2191 Score E Sequences producing significant alignments: (Bits) Value Ahg488867 jgi|Araly1|488867|fgenesh2_kg.6__2001__AT5G19740.1 3171 0.0 Ahg485877 jgi|Araly1|485877|fgenesh2_kg.5__1869__AT3G54720.1 126 6e-28 > Ahg488867 jgi|Araly1|488867|fgenesh2_kg.6__2001__AT5G19740.1 Length=2117 Score = 3171 bits (1717), Expect = 0.0 Identities = 1964/2083 (94%), Gaps = 17/2083 (1%) Strand=Plus/Plus Query 27 ATGATTATCTAAGAAGAAGCCCCATTGATGTCGAAATCAAAATCTCTAGCCTTCGTAATC 86 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || || Sbjct 3 ATGATTATCTAAGAAGAAGCTCCATTGATGTCGAAATCAAAACCTCTAGCCTTCATAGTC 62 Query 87 GCTGCTTTATCTTACTCCTTCTTCTCCCTCTTCTCTTCTCCACCAAAGTCTCACTACCAC 146 ||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||| Sbjct 63 GCTGCTTTATCTTACTCCTTC-T-T-CCTCTTCTCTTCTTCACCAAAGTCTCACTACCAC 119 Query 147 GAGCTCTTCATCTC-CACTTCCTTCTCCGACAACGCTTCCGTCGCTCTAAACCTCCACAC 205 ||||||||| |||| | |||||||||||||||||||||||||||||||||||||| || Sbjct 120 GAGCTCTTCCTCTCTGA-TTCCTTCTCCGACAACGCTTCCGTCGCTCTAAACCTCCGTAC 178 Query 206 CCTCACGCGCCGCCCTCATGTAGCCGGTACAGTGGCCAACGCTGAAGCAGCGGAATATGT 265 ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 179 CCTCACGCGCCGCCCTCATGTAGCCGGTACAGTAGCCAACGCTGAAGCAGCCGCATATGT 238 Query 266 TCGCTCTGTTTTCACCTCCTCTGCTCTCAAATCACACGTCGTTGCTTACCAAGTGTCTCT 325 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| Sbjct 239 TCGCTCTGTTTTCACCTCCTCTGCTCTCAAATCACACGTTGTTACTTACCAAGTATCTCT 298 Query 326 AACTTACCCAGTTCATCGCTCTTTGGTACTAACGCCGACAGACTCTGCAAAGCCAATCAC 385 |||||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||| Sbjct 299 AACTTACCCAGTTCATCGCTCTTTGGTACTAACGCCCACAGAATCCGCAAAGCCGATCAC 358 Query 386 TTTCTTGCTGGAACAAGAA-AAACTCGGAGACAATCCTTATGCTAATGAAGTGATGCCTA 444 ||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||| Sbjct 359 TTTCTTGCTGGAACAAGAACAAGC-CGGAGACAATCCTTATGCTAATGAAGTGATGCCTA 417 Query 445 CTTTTCATGGATACGCTAAGTCAGGTAACGTTTCAGGTCCAGTGGTTTATGCAAACTATG 504 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 418 CTTTTCATGGATACGCTAAGTCAGGTAATGTTTCAGGTCCAGTGGTTTATGCAAACTATG 477 Query 505 GACGAGTGGAAGATTTCGTGAGACTCAAGAAAGATATGGGCGTGAATGTCTCTGGAGCCG 564 ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| | Sbjct 478 GACGAGTGGAAGATTTCTTGAGACTCAAGAAAGATATGGGTGTGAATGTCTCTGGAGCTG 537 Query 565 TTGTAATCGCGAGGTACGGTCAGATATACAGAGGAGACATTGTGAAGAACGCTTACGAGG 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TTGTAATCGCGAGGTACGGTCAGATATACAGAGGAGACATTGTGAAGAACGCTTACGAGG 597 Query 625 CAGGAGCTGTAGGGGTTGTGATATATACTGATAAGAGAGATTACGGCGGAGATGAGTGGT 684 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 CAGGAGCTGTAGGTGTTGTGATATATACTGATAAGAGAGATTACGGCGGAGATGAGTGGT 657 Query 685 TTCCGGCGAGTAAATGGATGCCACCGAGTGGGGTTCAAGTTGGTACTGTTTATAATGGGT 744 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 658 TTCCGGCTAGTAAATGGATGCCACCGAGTGGGGTTCAGGTTGGTACTGTTTATAACGGGT 717 Query 745 TAGGTGATCCAACGACTCCTGGATGGGCAAGTGTTGATGGGTGTGAGAGATTATCGGACG 804 |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| | Sbjct 718 TAGGTGATCCAACGACTCCTGGGTGGGCAAGTGTTGATGGGTGTGAGAGATTGTCGGATG 777 Query 805 AGGCGGTTGAATTGAGCGGTGATGTTCCGCTTATACCGTCGTTGCCTGTCTCAGCTGCTG 864 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 778 AGGCGGTTGAATTGAGCGGTGATGTTCCGCTTATACCGTCGTTGCCTGTCTCGGCTGCTG 837 Query 865 ATGCTGAAGTGATTCTGAAGACAGTTGTTGGAGATGTTTCTGATGGAGATGTTTATCCAG 924 |||| ||||||||| ||||||| ||||| ||||||||| |||||||||| ||||||||| Sbjct 838 ATGCAGAAGTGATTTTGAAGACGGTTGTCGGAGATGTTGGTGATGGAGATATTTATCCAG 897 Query 925 TGGGGCCTGGACCTGGGGTCTTGAACCTCAGCTACATTGGGGAAACTGTTATTGCCAAGA 984 |||||||||||||||| |||||||||| || || | ||||||||||||||| ||| ||| Sbjct 898 TGGGGCCTGGACCTGGAATCTTGAACCTGAGTTATACTGGGGAAACTGTTATAGCCCAGA 957 Query 985 TTGAGAATGTTATTGGAGTGATTGAAGGAGAAGAAGAGCCTGATAGATATGTGATTCTTG 1044 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TTGAGAATGTTATTGGAGTGATTGAAGGAGAAGAAGAGCCTGATAGATATGTGATTCTTG 1017 Query 1045 GGAACCATAGAGACGCTTGGACTTTTGGAGCTGTTGATCCGAACAGTGGCACTGCGGTAC 1104 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1018 GGAGCCATAGAGACGCTTGGACTTTTGGAGCTGTTGACCCGAACAGTGGCACTGCGGTAC 1077 Query 1105 TTATGGAGATTGCACAAAGACTAGATAAGCTGCAGAAAAGAGGATGGAAGCCTCGAAGGA 1164 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1078 TTTTGGAGATTGCACAAAGACTAGATAAGCTGCAGAAAAGAGGATGGAAGCCTCGACGGA 1137 Query 1165 CGATTATTCTGTGTAATTGGGATGCTGAGGAGTATGGCCTGATTGGGTCAACAGAATGGG 1224 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 CGATTATTCTGTGCAATTGGGATGCTGAGGAGTATGGCCTGATTGGGTCAACAGAATGGG 1197 Query 1225 TAGAAGAAAATAGAGAGATGTTAAGTTCGAGAGCAGTGGCCTACTTGAATGTAGATTGTG 1284 |||||||||| ||||||||| ||| || ||||||||||||||| ||||||||||||||| Sbjct 1198 TAGAAGAAAACAGAGAGATGCTAACATCAAGAGCAGTGGCCTACCTGAATGTAGATTGTG 1257 Query 1285 CGGTATCTGGCCCTGGATTTCATGCCTCTGCGACTCCACAACTAGATGAATTGATCAAAG 1344 ||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 1258 CGGTATCTGGCCCCGGATTTCATGCCTCAGCAACTCCACAACTCGATGAATTGATAAAAA 1317 Query 1345 TAGCTGCTCAAGAGGTCCGGGATCCAGATAACGCAACGCAAACAATCTATGAATCGTGGA 1404 ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1318 TAGCTGCTCAAGAGGTCCGGGATCCAGATAACGCAGCGCAAACAATCTATGATTCGTGGA 1377 Query 1405 TAGGATCAAGCGACTCTGTTGTAATCAGG-AGATTAGGGGGCGGAGGTTCGGATTATGCA 1463 |||||||||| |||||||||| ||| || |||||||||||||||||||||||||| ||| Sbjct 1378 TAGGATCAAGTAACTCTGTTGTGATC-GGAAGATTAGGGGGCGGAGGTTCGGATTACGCA 1436 Query 1464 TCATTTGTACAACATGTTGGTGTTCCAGGAGTTGACATGTCCTTTGGACGAGGCTATCCA 1523 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 1437 TCATTTGTACAACATGTTGGCGTTCCAGGAGTTGACATGTCCTTTGGAGGAGGCTATCCA 1496 Query 1524 GTATATCACTCTATGTATGATGACTTCACTTGGATGGAAAAGTTTGGTGATCCGATGTTT 1583 || |||||||||||||||||||||||||||||||||||||| ||||| || || |||||| Sbjct 1497 GTCTATCACTCTATGTATGATGACTTCACTTGGATGGAAAAATTTGGAGACCCTATGTTT 1556 Query 1584 CAGCGACATGTCGCAATGGCTAGTGTTCTTGGTTTGGTCGCTCTTCGGTTAGCAGATGAG 1643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1557 CAGCGACATGTCGCAATGGCTAGTGTTCTTGGTTTGGTCGCTCTTCGGTTAGCAGACGAG 1616 Query 1644 GAAAT-TATACCATTCAACTATACTTCCTATGCATTAGAACTCAAGAAAAGCGCGGAAGA 1702 ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1617 GAAATCT-TACCATTCAACTATACTTCCTATGCACTAGAACTCAAGAAAAGCGCGGAAGA 1675 Query 1703 TTTGGAGAATGAGAAGTTAGGACATAACATAGATGTTTCTACGTTGATCAAGTCGATAGA 1762 ||||||||||||||||||||| ||||||||| |||| | | | ||||| || ||||| || Sbjct 1676 TTTGGAGAATGAGAAGTTAGGCCATAACATATATGTATATCCATTGATAAAATCGATCGA 1735 Query 1763 AGATCTATCTACGGCTGCAAAACATATATCCCTAGAGAAAGAGGCAATTAAAGGAGCTCT 1822 ||||||||||||||||||| || ||||| | |||||||||||||| ||||||||||| | Sbjct 1736 AGATCTATCTACGGCTGCACAATATATAAACATAGAGAAAGAGGCAGTTAAAGGAGCTTT 1795 Query 1823 TAAAGTGAGAGAGCTTAATGACAGATTAATGATGGCAGAACGAGCTTTAACAGACCGAGA 1882 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1796 TAAAGTGAGAGAGCTTAATGACAGATTAATGATGGCGGAACGAGCTTTAACAGACCGAGA 1855 Query 1883 TGGACTCTCTGAAAGACCATGGTACAAGCATTTGATATACGGACCATCGAAGTACGATGA 1942 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1856 TGGACTCTCTGAAAGACCATGGTACAAGCATTTGATATACGGACCATCGAAGTACGATGA 1915 Query 1943 CTACGG--A----TCGAAATCATTCCCTGGAGTTGATGATGCAATTGACAATGCAAAGAA 1996 |||||| | |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1916 CTACGGTTACGGATCGAAATCATTCCCTGGAGTTGATGATGCAGTTGACAATGCAAAGAA 1975 Query 1997 GCTAAACACAAAAGCATCTTGGGAAAATGTTCAACACCAGATTTGGAGAGTCTCTAGAGC 2056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1976 GCTAAACACAAAAGCATCTTGGGAAAATGTTCAACACCAGATTTGGAGAGTCTCTAGAGC 2035 Query 2057 TATTAGACATGCTTCACTTGTTTTAAAAGGTGAACTGATATGA 2099 ||| ||||| || |||||||| |||||||||||||||| |||| Sbjct 2036 TATAAGACAAGCATCACTTGTCTTAAAAGGTGAACTGAGATGA 2078 Score = 62.1 bits (33), Expect = 2e-08 Identities = 37/39 (95%), Gaps = 0/39 (0%) Strand=Plus/Plus Query 2117 TTGCTTCAGCACAATGATGTGAACATAATGAAGGCAGAT 2155 |||| |||||||||||||||||||||||||||| ||||| Sbjct 2079 TTGCATCAGCACAATGATGTGAACATAATGAAGACAGAT 2117 > Ahg485877 jgi|Araly1|485877|fgenesh2_kg.5__1869__AT3G54720.1 Length=2253 Score = 126 bits (68), Expect = 6e-28 Identities = 200/263 (76%), Gaps = 12/263 (5%) Strand=Plus/Plus Query 1032 TATGTGATTCTTGGGAACCATAGAGACGCTTGGACTTTTGGAGCTGTTGATCCGAACAGT 1091 ||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||||| Sbjct 1067 TATGTGATTCTTGGGAACCATAGAGACGCATGGACATATGGAGCTGTTGATCCAAACAGT 1126 Query 1092 GGCACTGCGGTACTTA-TGGAGATT-GCACAAAGACTAGATAAGCTGCAGAAAAGAGGAT 1149 || ||| | | | ||| | || ||| || | | || | | | | ||| ||| || | Sbjct 1127 GGAACTTCTGCA-TTACTTGACATTAGC-CGACGATTCGCTCTGTTGCTTAAATCTGGTT 1184 Query 1150 GGA-AGCCTCGAAGGACGATTATTCTGTGTAATTGGGATGCTGAGGAGTAT-GGCCTGAT 1207 ||| | || || ||||| ||| | || |||| ||||||||| || || | | || |||| Sbjct 1185 GGAGA-CCACGTAGGACCATTCTCCTTTGTAGTTGGGATGCAGAAGAAT-TCGGAATGAT 1242 Query 1208 TGGGTCAACAGAATGGGTAGAAGAAAATAGAGAG-ATGTTAAGTTCGAGAGCAGTGGCCT 1266 ||| ||||| |||||||| ||||||||| | | ||| || | || || ||||| | Sbjct 1243 TGGATCAACTGAATGGGTTGAAGAAAAT-GTTCTTAACTTAGGTGCAAGTGCTGTGGCTT 1301 Query 1267 A-CTTGAATGTAGATTGTGCGGT 1288 | ||| ||||||||||||||||| Sbjct 1302 ATCTT-AATGTAGATTGTGCGGT 1323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82465380425 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5