BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19750.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941526 jgi|Araly1|941526|scaffold_602070.1 1081 0.0
> Ahg941526 jgi|Araly1|941526|scaffold_602070.1
Length=892
Score = 1081 bits (585), Expect = 0.0
Identities = 808/910 (89%), Gaps = 37/910 (4%)
Strand=Plus/Plus
Query 36 TCAGACCAGACGAAACAACGATGCTTAACTCTATCACTTTAACCCGGAAACCACCACTCC 95
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 4 TCAGACCAGACGAAACAACGATGTTTAACCCCATCACTTTAACCCGGAAACCACCACTCC 63
Query 96 CGTTCAACT-CTGTTGGGTTTTCAGGTAATCACTCTTCGTCTTTTGGTCGAAGAACTATA 154
| ||||| | | ||| |||||| ||| | | | || | | | |||
Sbjct 64 CCTTCAA-TGTTCTTGCGTTTTCCGGT-A-GA-----AG------GG-C--A-ATGTAT- 104
Query 155 ACGGAAGGTAGTTCGAGCAAGGCTCTTTCGTTTGGGTACAAAAATGTTGGTTCACTGAAG 214
| ||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 105 A---AAGCTAGTTTGAGCAGGGCTCTTTCGTTTGGGTACAAATATGTTGGTTCACTGAAT 161
Query 215 TGTGGTCGGAGCAA-TTGGCCGGGGCGTTCTGGGACTGCGTTTGGGCATCT-AGTCCGGG 272
| |||||| ||||| ||| || ||| | || || |||| |||||||||||| || ||||
Sbjct 162 TTTGGTCGTAGCAATTTGTCC-GGGAGATCCGGAACTGGGTTTGGGCATCTGGGT-CGGG 219
Query 273 TCTCTGCGGTCCCAGGTGGGAA-TTCAggtggctctggcgggttaggtggttcaggcggt 331
||||| ||||| ||||| |||| ||||||||| || |||||||||||||||||| |||
Sbjct 220 TCTCTTCGGTCTCAGGT-GGAAGTTCAGGTGGTTCAGGCGGGTTAGGTGGTTCA---GGT 275
Query 332 ggtggtggtggttccggc---ggcggtggtggtgATGGAAGCGACGGAAAAGGAAAGAAG 388
|||||||||||||||||| || |||| |||||| || |||| |||||| || ||||||
Sbjct 276 GGTGGTGGTGGTTCCGGCGGTGGAGGTGATGGTGAAGGTAGCGGCGGAAACGGGAAGAAG 335
Query 389 TGGTCACTTC-TCTCATGGTACCAGGCTCTTCTCTCAAACTCTCCTGTTTTGACCAAAGC 447
|||||| ||| ||||||||||| ||||||||||||| | |||||||||||||| |||||
Sbjct 336 TGGTCA-TTCGTCTCATGGTACTTGGCTCTTCTCTCAGATTCTCCTGTTTTGACTAAAGC 394
Query 448 TGTGACCGCAGCACTTTTGAACCTCGTTGGAGATTTGATCTGTCAGCTTACTATCAACAA 507
||||||| |||||||||||| |||| |||||||| |||||||||||||||| ||||| ||
Sbjct 395 TGTGACCTCAGCACTTTTGACCCTCATTGGAGATGTGATCTGTCAGCTTACAATCAATAA 454
Query 508 GACCTCATCGCTGGACAAGAAGAGGACACTCACCTTTACCTTCTTGGGCTTAGGGCTAGT 567
||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 455 GACCTCATCACTGGACAAGAAGAGGACACTCACGTTTACCTTGTTGGGCTTAGGACTAGT 514
Query 568 CGGTCCAACATTGCATTTCTGGTATTTGTATTTGAGCAAAGTGGTGACAGCTTCTGGATT 627
||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 515 CGGACCAGCATTGCATTTCTGGTATCTGTATTTGAGCAAAGTGGTGACAGCTTCCGGATT 574
Query 628 ATCAGGCGCAGTTATACGACTTCTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 687
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 575 ATCAGGCGCAGTTATACGACTTTTACTGGATCAGTTTGTTTTTGCTCCTATTTTTGTTGG 634
Query 688 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGTCATACCGAAGCT 747
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 635 AGTTTTCTTATCAGCAGTTGTGACACTTGAAGGAAAACCATCAAATGCCATACCGAAGCT 694
Query 748 ACAACAGGAGTGGACTGGTGCAATGATAGCAAATTGGCAGCTATGGATACCATTTCAGTT 807
|||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct 695 ACAACAGGAGTGGACTGGTGCAGTGCTAGCAAATTGGCAACTATGGATACCATTTCAGTT 754
Query 808 TCTTAACTTCAGATTTGTTCCACAGAACTACCAGGTACTTGCTTCAAACGTAGTGGCTTT 867
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 755 TCTTAACTTCAGATTTGTTCCACAGAACTTCCAGGTACTTGCTTCAAACGTAGTGGCTTT 814
Query 868 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAAGTTGTTGCAAAGTAGACATG 927
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||
Sbjct 815 GGCTTGGAATGTGATTTTATCATTCAAAGCTCACAAAGAGGTTGTCGCAAAGTAGGCATG 874
Query 928 TTTCTTACCT 937
||||||||||
Sbjct 875 TTTCTTACCT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5