BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19780.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488873 jgi|Araly1|488873|fgenesh2_kg.6__2007__AT5G19780.1 2608 0.0
Ahg488871 jgi|Araly1|488871|fgenesh2_kg.6__2005__AT5G19780.1 2497 0.0
Ahg475472 jgi|Araly1|475472|fgenesh2_kg.2__602__AT1G64740.1 1068 0.0
> Ahg488873 jgi|Araly1|488873|fgenesh2_kg.6__2007__AT5G19780.1
Length=1667
Score = 2608 bits (1412), Expect = 0.0
Identities = 1562/1634 (96%), Gaps = 11/1634 (1%)
Strand=Plus/Plus
Query 111 CTCGAATTAGGGTTTCTGCTGAGAGAAGATGAGGGAAATTATTAGCATTCATATCGGACA 170
||| |||||||||| || ||||||||||||| | ||||| || |||||||||||||||||
Sbjct 35 CTC-AATTAGGGTTCCTACTGAGAGAAGATGCGAGAAATCATAAGCATTCATATCGGACA 93
Query 171 AGCCGGGATCCAAGTCGGAAATTCCTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCA 230
||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 94 AGCTGGGATCCAGGTCGGGAATTCGTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCA 153
Query 231 GCCCGACGGAATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATAC 290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 154 GCCCGACGGAATGATGCCGAGTGATACTACAGTTGGTGTTGCGCACGATGCGTTCAACAC 213
Query 291 TTTCTTTAGCGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGA 350
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 214 CTTCTTTAGCGAGACTGGTGCTGGGAAGCATGTCCCTAGGGCTGTCTTCGTTGATCTTGA 273
Query 351 GCCTACCGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCA 410
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 274 GCCTACTGTTATCGACGAAGTTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCA 333
Query 411 GCTCATTTCTGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGG 470
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GCTCATTTCCGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGG 393
Query 471 AAAGGAAATTGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGACAACTGTACTGG 530
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 394 AAAGGAAATTGTGGATCTATGCCTTGACCGTGTGAGGAAACTTGCCGACAACTGTACTGG 453
Query 531 CTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTC 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 CTTACAAGGGTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTC 513
Query 591 TCTGTTGCTAGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCAT 650
||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 514 TCTGTTGTTAGAACGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTCACCAT 573
Query 651 ATACCCTTCTCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAAC 710
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 574 TTACCCTTCTCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAAC 633
Query 711 GCATTCCCTTCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGA 770
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GCATTCCCTTCTTGAACACACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGA 693
Query 771 CATTTGCCGCAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGAT 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 CATTTGCCGCAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGAT 753
Query 831 ATCACAGATCATTTCATCCTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGA 890
|||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 754 ATCACAGATCATTTCATCCTTGACAACATCGTTGAGGTTTGATGGAGCCATCAATGTGGA 813
Query 891 TATCACTGAGTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATC 950
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 814 TATCACTGAGTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTCTCATC 873
Query 951 TTATGCACCAGTCATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGAT 1010
|||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 874 TTATGCACCAGTCATCTCAGCCGCCAAGGCTTACCATGAACAGTTATCAGTCCCTGAGAT 933
Query 1011 CACCAATGCCGTGTTTGAGCCAGCGAGCATGATGGCAAAGTGTGACCCAAGGCACGGAAA 1070
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 934 CACCAATGCCGTGTTTGAGCCAGCTAGCATGATGGCAAAGTGTGACCCGAGGCACGGAAA 993
Query 1071 GTACATGGCATGTTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGC 1130
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 994 GTACATGGCATGTTGTTTGATGTACCGTGGAGATGTCGTTCCCAAAGATGTTAATGCTGC 1053
Query 1131 CGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTT 1190
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TGTTGGCACCATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTT 1113
Query 1191 CAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CAAATGTGGAATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGT 1173
Query 1251 TCAGAGAGCTGTATGCATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGAT 1310
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1174 TCAGAGAGCTGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGAT 1233
Query 1311 CGACCACAAGTTTGATCTCATGTATGCGAAGAGGGCATTCGTGCACTGGTACGTTGGTGA 1370
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1234 CGACCACAAGTTTGATCTTATGTATGCAAAGAGGGCATTTGTGCACTGGTACGTTGGTGA 1293
Query 1371 AGGAATGGAGGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGA 1430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 GGGAATGGAGGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGA 1353
Query 1431 CTACGAAGAAGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATTG 1490
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1354 TTACGAAGAAGTGGGTGCTGAAGGTGGTGACGATGAAGAAGATGAAGGTGAAGACTATTG 1413
Query 1491 ACACCTTTTCTCAAGCAATGTGCTACCAAAAAGTTTTTTCGTTTATCTGTTTTCATTA-A 1549
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
Sbjct 1414 ACACCTTTTCTCAAGCAATGAGCAACCAAAAAGTTTTTTCGTTTATCTGTTTTCATTTTA 1473
Query 1550 TGATTCTTGTTGATTACATGTTTGTTTTAATCCTGTACAATATTC---G-A-TCCT-CC- 1602
||||||||||||||||||||||||||||||||||||||||||| | | | | || ||
Sbjct 1474 TGATTCTTGTTGATTACATGTTTGTTTTAATCCTGTACAATATCCATTGGACTTCTTCCG 1533
Query 1603 --TTCGTGTTTCATCTCGGTTAGATACATTTTCATTGGTAGAGCGACCATTGGGGAAGAT 1660
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 CCTTAATGTTTTATCTCGGTTAGATACATTTTCATTGGTAGAGCGACCATTGGGGAAGAT 1593
Query 1661 CCCGAGTTCATTATCAAGCTTTTGTTGTACGAAACCTTCATTATCTTCTTACATTGTCCA 1720
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1594 CCCGAGTTCATTATCAAGCTTTTGTTGTACCAAACCTTCATTATCTTCTTACAGTGTCCA 1653
Query 1721 TTTTCTTTAGGTAC 1734
|||||| |||||||
Sbjct 1654 TTTTCTATAGGTAC 1667
> Ahg488871 jgi|Araly1|488871|fgenesh2_kg.6__2005__AT5G19780.1
Length=1693
Score = 2497 bits (1352), Expect = 0.0
Identities = 1605/1722 (93%), Gaps = 38/1722 (2%)
Strand=Plus/Plus
Query 1 ATAAACCTAATTTGCCAACGAAGTTGAACCaaaaaaaGAAGATCTCACTCTCACCGCCTT 60
||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
Sbjct 1 ATAAACCTAATTTGCCAACGAAGTTAAACCAAAAAAAGAAGATCT--CGCTCACCGCC-T 57
Query 61 CATTTCCTCGATCTCCGTCTTCCTCCTTCTCCGT-CTGTCGCAGAGCATCGCTCGAATTA 119
|||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||
Sbjct 58 CATTTCCTCGATCTCCGTTTTCCTCATTCTCCGTGC-GTCGCAGAGCATCGCTCGAATTA 116
Query 120 GGGTTTCTGCTGAGAGAAGATGAGGGAAATTATTAGCATTCATATCGGACAAGCCGGGAT 179
|||||||||||| | ||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 117 GGGTTTCTGCTGTGCGAAGATGAGGGAAATCATAAGCATTCATATCGGACAAGCTGGGAT 176
Query 180 CCAAGTCGGAAATTCCTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGG 239
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CCAGGTCGGAAATTCGTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGG 236
Query 240 AATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAATACTTTCTTTAG 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 237 AATGATGCCGAGTGATACTACAGTTGGTGTTGCACACGATGCGTTCAACACTTTCTTTAG 296
Query 300 CGAGACTGGAGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTCGAGCCTACCGT 359
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 297 CGAGACTGGCGCTGGGAAGCATGTTCCTAGGGCTGTCTTCGTTGATCTTGAGCCTACTGT 356
Query 360 TATCGACGAAGTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTC 419
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 357 TATCGACGAAGTTCGTACTGGTACTTACCGTCAGCTTTTCCATCCTGAGCAGCTTATCTC 416
Query 420 TGGGAAAGAAGATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAAT 479
||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 417 TGGTAAAGAAGATGCTGCCAACAACTTCGCTAGAGGCCATTACACAGTTGGAAAGGAAAT 476
Query 480 TGTGGATCTATGTCTTGACCGTGTGAGGAAGCTTGCCGACAACTGTACTGGCTTACAAGG 539
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 477 TGTGGATCTATGCCTTGACCGTGTGAGGAAACTTGCCGACAATTGTACTGGCTTACAAGG 536
Query 540 GTTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 537 ATTTTTGGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGTT 596
Query 600 AGAGCGTTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTC 659
||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct 597 AGAACGTTTGTCTGTAGATTATGGAAAGAAGTCTAAGCTTGGTTTCACCATTTACCCTTC 656
Query 660 TCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCT 719
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 657 TCCTCAGGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTTCTCTCAACGCATTCCCT 716
Query 720 TCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCG 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 717 TCTTGAACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGATATTTGCCG 776
Query 780 CAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGAT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CAGATCCCTAGATATCGAGAGGCCAACCTACACAAACTTGAACAGGTTGATATCACAGAT 836
Query 840 CATTTCATCCTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATCACTGA 899
||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 837 CATTTCATCCTTGACAACATCGTTGAGGTTTGATGGAGCCATCAATGTGGATATCACTGA 896
Query 900 GTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTATGCACC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTCCAGACCAATCTTGTCCCATATCCCCGTATCCATTTCATGCTGTCATCTTATGCACC 956
Query 960 AGTCATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACCAATGC 1019
||||||||||||||| || |||||||| || ||| |||||||||||||||||||||||||
Sbjct 957 AGTCATCTCAGCCGCAAAAGCTTACCATGAACAGTTATCAGTCCCTGAGATCACCAATGC 1016
Query 1020 CGTGTTTGAGCCAGCGAGCATGATGGCAAAGTGTGACCCAAGGCACGGAAAGTACATGGC 1079
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1017 CGTGTTTGAGCCAGCTAGCATGATGGCAAAGTGTGACCCGAGGCACGGAAAGTACATGGC 1076
Query 1080 ATGTTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCCGTTGGCAC 1139
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1077 ATGTTGTTTGATGTACCGTGGAGATGTTGTTCCCAAAGATGTTAATGCTGCTGTTGGCAC 1136
Query 1140 CATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGG 1199
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1137 CATCAAGACAAAGAGGACTGTACAGTTTGTTGACTGGTGCCCGACTGGGTTCAAATGTGG 1196
Query 1200 AATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGAGAGC 1259
|||||||||||||||||||||||| |||||||| || ||||| ||||| || ||||||||
Sbjct 1197 AATCAACTACCAACCTCCAACAGTCGTTCCAGGAGGCGACCTTGCTAAAGTCCAGAGAGC 1256
Query 1260 TGTATGCATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGACCACAA 1319
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1257 TGTGTGCATGATCAGTAACAACACAGCAGTTGCGGAGGTGTTCTCACGGATCGACCACAA 1316
Query 1320 GTTTGATCTCATGTATGCGAAGAGGGCATTCGTGCACTGGTACGTTGGTGAAGGAATGGA 1379
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1317 GTTTGATCTCATGTATGCGAAGAGGGCATTCGTACACTGGTACGTCGGTGAAGGAATGGA 1376
Query 1380 GGAAGGTGAATTCTCTGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGACTACGAAGA 1439
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1377 GGAAGGTGAATTCTCCGAGGCACGTGAAGACTTGGCCGCACTGGAGAAAGATTACGAAGA 1436
Query 1440 AGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATTGACACCTTTT 1499
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1437 AGTTGGTGCCGAAGGTGGAGATGATGAAGAAGATGAAGGTGAAGACTACTGACACCTTTT 1496
Query 1500 CTCAAGCAATG-------TGCTACCAAAAAGTTTTTTCGTTTATCTGTTTTCA-TTAATG 1551
||||| || ||| ||||||||||||||||||| ||||||| ||| || ||
Sbjct 1497 CTCAAAAAAAAAAAAAACTGCAACCAAAAAGTTTTTTCGTTGATCTGTTATCACTTT-TG 1555
Query 1552 ATTCTTGTTGATTACATGTTTGTTTTAATCCTGTACAATATTCGATCCTCCTTCGTGTTT 1611
||||||||||||| |||| | |||||||||||||||||| || |||||||||||
Sbjct 1556 ATTCTTGTTGATT----GTTT-T---AATCCTGTACAATATTCGTTCGGCCTTCGTGTTT 1607
Query 1612 CATCTCGGTTAGATACATTTTCATTGGTAGAGCGACCATTGGGGAAGATCCCGAGTTCAT 1671
||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1608 TATCTCGGTTGGATACATTTTCATTGGTAGAG------T----------CCCGAGTTCAT 1651
Query 1672 TATCAAGCTTTTGTTGTACGAAACCTTCATTATCTTCTTACA 1713
||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1652 TATCAAGCTTTTGTTGTACCAAACCTTTATTATCTTCTTACA 1693
> Ahg475472 jgi|Araly1|475472|fgenesh2_kg.2__602__AT1G64740.1
Length=1637
Score = 1068 bits (578), Expect = 0.0
Identities = 1113/1372 (81%), Gaps = 34/1372 (2%)
Strand=Plus/Plus
Query 135 GAAGATGAGGGAAATTATTAGCATTCATATCGGACAAGCCGGGATCCAAGTCGGAAATTC 194
||| |||||||| || ||||||||||||||||||||||| || || || || ||||||||
Sbjct 100 GAACATGAGGGAGATCATTAGCATTCATATCGGACAAGCTGGTATTCAGGTTGGAAATTC 159
Query 195 CTGCTGGGAGCTTTACTGTCTCGAACATGGAATCCAGCCCGACGGAATGATGCCGAGTGA 254
|| ||||||||||| |||||||||||||| ||||| ||||| || | ||||| |||||
Sbjct 160 TTGTTGGGAGCTTTATTGTCTCGAACATGGTATCCAACCCGATGGCACCATGCCCAGTGA 219
Query 255 TACTACAGTTGGTGT-TGCACACGATGCGTTCAATACTTTCTTTAGCGAGACTGGAGCT- 312
|| ||| || ||||| || || ||||| ||||| || |||||||||||||| ||||
Sbjct 220 TAGTACTGTGGGTGTATG-TCATGATGCATTCAACACATTCTTTAGCGAGAC--AAGCTC 276
Query 313 -GG-GAAGCATGTTCCTAGGGCTGT-CTTCGTTGATCTCGAGCCTACCGTTATCGACGAA 369
|| || ||||||||| ||||||| ||| |||||||||| || ||||| || || |||
Sbjct 277 AGGCCAA-CATGTTCCTCGGGCTGTGTTTC-TTGATCTCGAACCAACCGTCATTGATGAA 334
Query 370 GTTCGTACTGGTACTTACCGTCAACTTTTCCATCCAGAGCAGCTCATTTCTGGGAAAGAA 429
|| | || || |||||| | || ||||||||||| ||||| || || ||||| ||||||
Sbjct 335 GTAAGAACCGGCACTTACAGACAGCTTTTCCATCCCGAGCAACTTATCTCTGGCAAAGAA 394
Query 430 GATGCTGCTAACAACTTCGCTAGAGGACATTACACTGTTGGAAAGGAAATTGTGGATCTA 489
||||| || || ||||| |||||||| |||||||||||||||| ||||||||| || | |
Sbjct 395 GATGCAGCCAATAACTTTGCTAGAGGCCATTACACTGTTGGAAGGGAAATTGTTGA-C-A 452
Query 490 --TGTCTTGACCGTG-TGAGGAAGCTT-GCCGACAACTGTACTGGCTTACAAGGGTTTTT 545
|| ||||| | | ||||||| || || ||||| || || || |||||||| |||||
Sbjct 453 CCTGCCTTGAAAG-GCTGAGGAA-ATTGGCAGACAATTGCACAGGGTTACAAGGATTTTT 510
Query 546 GGTGTTCAATGCTGTTGGTGGTGGAACTGGTTCTGGATTGGGTTCTCTGTTGCTAGAGCG 605
|||||| ||||||||||| |||||||| |||||||| ||||||||| | || | |||||
Sbjct 511 GGTGTTTAATGCTGTTGGGGGTGGAACAGGTTCTGGTTTGGGTTCTTTACTGTTGGAGCG 570
Query 606 TTTGTCTGTAGATTACGGAAAGAAGTCTAAGCTTGGTTTTACCATATACCCTTCTCCTCA 665
||||| ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct 571 CTTGTCCGTAGATTTTGGAAAGAAATCTAAACTCGGTTTCACCATATACCCTTCTCCTCA 630
Query 666 GGTTTCTACTGCTGTTGTAGAGCCTTACAACAGTGTGCTTTCAACGCATTCCCTTCTTGA 725
||||||||| || ||||||||||| || |||||||| || || || ||||| ||||| ||
Sbjct 631 GGTTTCTACAGCAGTTGTAGAGCCATATAACAGTGTTCTCTCGACTCATTCTCTTCTCGA 690
Query 726 ACATACCGATGTAGCTGTCCTCTTGGATAACGAAGCCATCTATGACATTTGCCGCAGATC 785
||| || ||||| | ||| || ||||| || |||||||| || || || ||| | |||||
Sbjct 691 ACACACAGATGTTGTTGTTCTTTTGGACAATGAAGCCATATACGATATCTGCAGGAGATC 750
Query 786 CCTAGATATCGAGAGGCCAACCTACACAAA-CTTGAACAGGTTGATATCACAGATCATTT 844
|||| || |||||||| || ||||| || || |||| | ||||| || || | ||| |
Sbjct 751 TTTAGACATTGAGAGGCCTACGTACACCAATCT-GAACCGCTTGATCTCCCAAACCATCT 809
Query 845 CATC-CTTGACAACATCTTTGAGGTTTGATGGTGCCATCAACGTGGATATCACTGAGTTC 903
| || ||| ||||| ||| |||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct 810 CTTCGCTT-ACAACTTCTCTGAGATTTGACGGTGCCATCAACGTGGACATCACGGAGTTC 868
Query 904 CAGACCAATCTTGTCCCATATCCC-CGTATCCATTTCATGCTGTCATCTTATGCACCAGT 962
|||||||| ||||| || || ||| || ||||| |||||||| || ||||||||||| ||
Sbjct 869 CAGACCAACCTTGTACCTTA-CCCTCGGATCCACTTCATGCTCTCCTCTTATGCACCTGT 927
Query 963 CATCTCAGCCGCCAAGGCTTACCACGAGCAGCTATCAGTCCCTGAGATCACCAATGCCGT 1022
|| ||| | || ||||| ||||| |||||| | ||||||||||||||||| | | | ||
Sbjct 928 GATTTCATCTGCAAAGGCCTACCATGAGCAGTTCTCAGTCCCTGAGATCACGACTTCTGT 987
Query 1023 GTTTGAGCCAGCGAGCATGATGGC-AAAGTGTGACCCAAGGCACGGAAAGTACATGGCAT 1081
||||| || | | |||||||| ||| |||||||||||||| || ||||||||||| |
Sbjct 988 CTTTGAACCCTCCAATATGATGGCCAAA-TGTGACCCAAGGCATGGGAAGTACATGGCTT 1046
Query 1082 GTTGTTTGATGTACCGAGGAGATGTTGTTCCCAAAGATGTTAATGCTGCCGTTGGCA-CC 1140
| ||||||||||| || || |||||||| || || ||||| ||| | ||||||| | ||
Sbjct 1047 GCTGTTTGATGTATCGTGGTGATGTTGTGCCTAAGGATGTCAATACAGCCGTTG-CTGCC 1105
Query 1141 ATCAAGACAAAGAGGACTGTTCAGTTTGTTGACTGGTGCCCAACTGGGTTCAAATGTGGA 1200
||||| || ||| | || |||||||||||||||||||||||||||| |||||||| |||
Sbjct 1106 ATCAAAACCAAGCGAACAATTCAGTTTGTTGACTGGTGCCCAACTGGATTCAAATGCGGA 1165
Query 1201 ATCAACTACCAACCTCCAACAGTTGTTCCAGGTGGTGACCTCGCTAAGGTTCAGA-GAGC 1259
|| |||||||| || || |||||||||||||||||||||| || |||||||| | ||||
Sbjct 1166 ATAAACTACCAGCCGCCTTCAGTTGTTCCAGGTGGTGACCTGGCGAAGGTTCA-ACGAGC 1224
Query 1260 TGTATGCATGATCAGTAACAACACAGCAGTTGCAGAGGTGTTCTCACGGATCGACCACAA 1319
|| ||||||||||| ||||| || ||||| || || |||||||| || || ||||||||
Sbjct 1225 AGTTTGCATGATCAGCAACAATACTGCAGTGGCGGAAGTGTTCTCTCGCATAGACCACAA 1284
Query 1320 GTTTGATCTCATGTA-TGCGAAGAGGGCATTCGTGCACTGGTACGTTGGTGAAGGAATGG 1378
||||||||||||||| | | || || ||||| || || ||||| || |||||||| ||||
Sbjct 1285 GTTTGATCTCATGTACTCCAAA-AGAGCATTTGTCCATTGGTATGTAGGTGAAGGCATGG 1343
Query 1379 AGGAAGGTGAATTCTCTGAGGCACGTGAAGA-CTTGGCCGCACTGGAGAAAGACTACGAA 1437
| ||||| || ||||||||||| ||||| || |||| | || || |||||||| || ||
Sbjct 1344 AAGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTTG-CTGCTCTTGAGAAAGATTATGAG 1402
Query 1438 GAAGTTGGTGCTGAAGGTGGAGACGATGAAGAAGATGAAGGTGAAGACTATT 1489
||||||||||| ||||| | ||| ||||| || || ||||| || || ||||
Sbjct 1403 GAAGTTGGTGCAGAAGGAGCAGAGGATGACGACGAAGAAGGCGATGAGTATT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5