BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19790.1
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941530 jgi|Araly1|941530|scaffold_602074.1 1229 0.0
> Ahg941530 jgi|Araly1|941530|scaffold_602074.1
Length=798
Score = 1229 bits (665), Expect = 0.0
Identities = 753/793 (95%), Gaps = 15/793 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaTATGGAACATCAAACAACTCCAAAGCAGAAAACTAAGGAGAAGAGCAAAGGCA 60
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 14 AAAAAAAAATGGAACATCAAACAACTCCAAAGCAGAAAACAAAGGAGAAGAGCAAAGGCA 73
Query 61 ACAAGACTAAGTTTGTGGGAGTTAGGCAAAGGCCTTCAGGAAAATGGGTGGCAGAGATCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 ACAAGACTAAGTTTGTGGGAGTTAGGCAAAGGCCTTCAGGAAAATGGGTGGCAGAGATCA 133
Query 121 AAGACACTACACAAAAGATACGGATGTGGCTCGGAACCTTTGAAACCGCAGAAGAAGCCG 180
||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 134 AAGACACTACACAAAAGATACGGATGTGGCTCGGAACTTTTGAGACCGCAGAGGAAGCCG 193
Query 181 CTCGAGCCTACGATGAAGCTGCATGTCTCTTACGTGGCTCCAATACTCGCACCAATTTCG 240
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 194 CTCGAGCCTACGATGAAGCTGCCTGTCTTTTACGTGGCTCCAATACTCGCACCAATTTCG 253
Query 241 CAAACCATTTTCCTAACAACTCACAACTATCTTTGAAGATCAGAAATCTTCTTCACCAGA 300
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 254 CAAACCATTTTCCTAACAACTCACAACTTTCTTTGAAGATCAGAAACCTCCTTCACCAGA 313
Query 301 AGCAGAGCATGAAGCAGCAGCAACAACAACAACACAAACCAGTTTCTTCTTTAACGGATT 360
|||||||||||||||| | |||||||||||||||||||| ||||||||||| |||| |
Sbjct 314 AGCAGAGCATGAAGCA--A-CAACAACAACAACACAAACCCGTTTCTTCTTTTGCGGACT 370
Query 361 GCAACATCAACTACATCT-CGACTGCTACTAGTCTcaccacaaccaccaccaccaccact 419
||| ||||||||||| || ||||||||||||||||||||||||| |||||||| |
Sbjct 371 GCAGCATCAACTACA-CTTCGACTGCTACTAGTCTCACCACAACTACCACCAC------T 423
Query 420 accacGGCCATACCGCTCAATAATGTGTACCGACCAGATTCATCGGTCATTGGGCAACCA 479
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 424 ACCACGGCTATGCCGCTCAATAATGTGTACAGACCAGATTCATCGGTCATTGGGCAACCA 483
Query 480 GAAACCGAGGGTCTCCAGCTTCCTTATTCGTGGCCCCTTGTCTCTGGATTCAACCATCAG 539
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 GAAACCGACAGTCTCCAGCTTCCTTATTCATGGCCCCTTGTCTCTGGATTCAACCATCAG 543
Query 540 ATTCCATTGGCTCAGGCAGGGGGAGAA-A--CACATGGACATCTCAACGATCACTACTCA 596
|||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 544 ATTCCATTGGCTCAGGGAGGGGGAGAAGAAACACATGGACATCTCAACGATCACTACTCA 603
Query 597 ACCGATCAACATTTGGGTCTTGCAGAAATTGAAAGACAGATATCTGCGTCCCTATATGCA 656
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 ACCGATCAACATTTGGGTCTTGCAGAAATCGAAAGACAGATATCTGCGTCCCTATATGCA 663
Query 657 ATGAATGGAGCTAACAGTTACTATGACAACATGAATGCAGAATATGCAATTTTCGATCCT 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 ATGAATGGAGCTAACAGTTACTATGACAACATGAATGCAGAATATGCAATTTTCGATCCT 723
Query 717 ACCGATCCCATTTGGGATCTCCCTTCACTCTCCCAACTCTTCTGCCCTACGTGATTTCCA 776
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 724 ACCGATCCCATTTGGGATCTCCCTTCACTCTCCCAACTTTTCTGCCCTACGTGATT-CCA 782
Query 777 ATTTACTTTTCCT 789
|||||||||||||
Sbjct 783 ATTTACTTTTCCT 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34615608636
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5