BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19810.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488876 jgi|Araly1|488876|fgenesh2_kg.6__2010__AT5G19810.1 754 0.0
> Ahg488876 jgi|Araly1|488876|fgenesh2_kg.6__2010__AT5G19810.1
Length=685
Score = 754 bits (408), Expect = 0.0
Identities = 512/562 (91%), Gaps = 7/562 (1%)
Strand=Plus/Plus
Query 189 TCCACCACCGGTTAATCTTTCTCCTCCTCCACCCCCGGTTAATCTAtctcctcctccacc 248
|||||| || ||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 129 TCCACCTCCCGTTAATCTTTCTCCTCCTCCACCCCAGGTTAATCTTTCTCCTCCTCCACC 188
Query 249 cccggttaatctttctcctcctccgcccccggttcttctttctcctcctccgcccccggt 308
|||||||| ||||||||||||||| || ||||||| ||||||||||||||| ||||||||
Sbjct 189 CCCGGTTATTCTTTCTCCTCCTCCACCTCCGGTTCCTCTTTCTCCTCCTCCACCCCCGGT 248
Query 309 taatctttctcctcctccacccccggttaatctttctcctcctccaccaccggttcttct 368
|| |||||||||||||||||| |||||| |||||||||||||||||| |||||| ||||
Sbjct 249 TATTCTTTCTCCTCCTCCACCTCCGGTTCCTCTTTCTCCTCCTCCACCCCCGGTTATTCT 308
Query 369 ttctcctcctccgcccccggttcttctttctcctcctccgcccccggttaatctatctcc 428
|||||||||||| |||||||||| ||||||||||||||| |||||| || ||| |||||
Sbjct 309 TTCTCCTCCTCCACCCCCGGTTCCTCTTTCTCCTCCTCCACCCCCGATTCCTCTTTCTCC 368
Query 429 tcctccacccccggttcttctttctcctcctccacctccggttcttttttctcctcctcc 488
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 369 TCCTCCACCCCCGGTTCTTCTTTCTCCTCCTCCACCCCCGGTTCCTCTTTCTCCTCCTCC 428
Query 489 acccacag-ttactcgtcctcctcctccacccacaattactcgttctcctcctcctcctc 547
|||| | | || ||||| |||||||||||||| | |||||||||| |||||||||||||
Sbjct 429 ACCC-CTGGTTCCTCGTTCTCCTCCTCCACCCCCGGTTACTCGTTCCCCTCCTCCTCCTC 487
Query 548 gacctcAAGCCGCTGCTTACTACAAGAAAACTCCACCGCCACCACCCTATAAATATGGAA 607
||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||
Sbjct 488 GACCTCAAGCCGCTGCTTACTACAAGAGAACTCCACCACCACCACCTTCTAAATATGGAA 547
Query 608 GAGTGTATCCACCACCTCCTCCTCCACCTCAAGCCGCT-CGTTCCTACAAGAGATCTCCA 666
|||| |||||||| |||||||||| ||||||||||||| | || |||||||||| |||||
Sbjct 548 GAGTTTATCCACCTCCTCCTCCTCGACCTCAAGCCGCTGC-TTACTACAAGAGAACTCCA 606
Query 667 CCGCCGCCACCACCCTCTAAATATGGAAGAGTGTATTCACCACCTCCTCCCGGAAAATCA 726
||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 607 CCGCC---ACCACCCTCTAAATATGGAAGAGTGTATCCACCACCTCCTGCCGGAAAATCA 663
Query 727 TGGTTGTGGTTCTTGAAGCTCT 748
||||||||||||||||||||||
Sbjct 664 TGGTTGTGGTTCTTGAAGCTCT 685
Score = 588 bits (318), Expect = 2e-167
Identities = 553/660 (84%), Gaps = 42/660 (6%)
Strand=Plus/Plus
Query 1 ATGGTGTCCCGAAGGTTTTCCCTGATCCTACTATTTCTCTTGGCAACCTTAATCACAGTT 60
|||||||||| |||||||||| ||| |||||| ||||||||||||| |||||||||||||
Sbjct 1 ATGGTGTCCCAAAGGTTTTCCTTGACCCTACTTTTTCTCTTGGCAATCTTAATCACAGTT 60
Query 61 GCTAATGGAAACAACAACAGAAAGCTATTGACTTCTGCTCCAGAACCAGCACCCCTGGT- 119
|||||||||||||||||||||||||||||||| ||| | || || | | ||| |
Sbjct 61 GCTAATGGAAACAACAACAGAAAGCTATTGACATCT--TACA-AA-TA-TTCTCCTCCTC 115
Query 120 TGATCTATCTCCTCCTCCACC-CCCGGTTAATATATCTTCTCCTCCACCCCCGGTTAATC 178
| | | || |||||| ||| |||||| | ||| |||||||||||| ||||||||
Sbjct 116 CGCCCCCGGT-CT-ATCCACCTCCC-GTTAATCTTTCTCCTCCTCCACCCCAGGTTAATC 172
Query 179 TATCTCCTCCTCCACCACCGGTTAATCTTTCTCCTCCTCCACCCCCGGTTAATCTAtctc 238
| |||||||||||||| ||||||| |||||||||||||||||| |||||| ||| ||||
Sbjct 173 TTTCTCCTCCTCCACCCCCGGTTATTCTTTCTCCTCCTCCACCTCCGGTTCCTCTTTCTC 232
Query 239 ctcctccacccccggttaatctttctcctcctccgcccccggttcttctttctcctcctc 298
|||||||||||||||||| ||||||||||||||| || ||||||| ||||||||||||||
Sbjct 233 CTCCTCCACCCCCGGTTATTCTTTCTCCTCCTCCACCTCCGGTTCCTCTTTCTCCTCCTC 292
Query 299 cgcccccggttaatctttctcctcctccacccccggttaatctttctcctcctccaccac 358
| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 293 CACCCCCGGTTATTCTTTCTCCTCCTCCACCCCCGGTTCCTCTTTCTCCTCCTCCACCCC 352
Query 359 cggttcttctttctcctcctccgcccccggttcttctttctcctcctccgcccccggtta 418
|| ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 353 CGATTCCTCTTTCTCCTCCTCCACCCCCGGTTCTTCTTTCTCCTCCTCCACCCCCGGTTC 412
Query 419 atctatctcctcctccacccccggttcttctttctcctcctccacctccggtt-ct--tt 475
||| |||||||||||||||| ||||| || ||||||||||||||| |||||| || ||
Sbjct 413 CTCTTTCTCCTCCTCCACCCCTGGTTCCTCGTTCTCCTCCTCCACCCCCGGTTACTCGTT 472
Query 476 ---tttctcctcctccacc-c-a----cag-ttact-c----g---tcctcctcctccac 517
| ||||||||| ||| | | | | ||||| | | ||| || || ||||
Sbjct 473 CCCCTCCTCCTCCTCGACCTCAAGCCGCTGCTTACTACAAGAGAACTCCACCACCACCAC 532
Query 518 c--c-acaat-t--actcg--t-t-ctcctcctcctcctcgacctcAAGCCGCTGCTTAC 567
| | | ||| | | | | | | |||||||||||||||||||||||||||||||||
Sbjct 533 CTTCTA-AATATGGAAGAGTTTATCCACCTCCTCCTCCTCGACCTCAAGCCGCTGCTTAC 591
Query 568 TACAAGAAAACTCCACCGCCACCACCCTATAAATATGGAAGAGTGTATCCACCACCTCCT 627
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 592 TACAAGAGAACTCCACCGCCACCACCCTCTAAATATGGAAGAGTGTATCCACCACCTCCT 651
Score = 45.4 bits (24), Expect = 6e-04
Identities = 31/34 (91%), Gaps = 2/34 (6%)
Strand=Plus/Plus
Query 162 TCCACC-CCCGGTTAATCTATCTCCTCCTCCACC 194
|||||| ||| |||||||| ||||||||||||||
Sbjct 129 TCCACCTCCC-GTTAATCTTTCTCCTCCTCCACC 161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5