BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19820.1
Length=3922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488877 jgi|Araly1|488877|fgenesh2_kg.6__2011__AT5G19820.1 6276 0.0
Ahg314839 jgi|Araly1|314839|fgenesh1_pm.C_scaffold_1003619 1134 0.0
> Ahg488877 jgi|Araly1|488877|fgenesh2_kg.6__2011__AT5G19820.1
Length=3906
Score = 6276 bits (3398), Expect = 0.0
Identities = 3756/3925 (96%), Gaps = 40/3925 (1%)
Strand=Plus/Plus
Query 15 TAGCTTTAGCCACTTTTTAACCCTAGTTTTTCCCGCCGCCACCATCCCCCATGGCTTCCG 74
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1 TAGCTTTAGCCACTTTTTAACCCTAGTTTTTCCCGCCGCCACCTTCCACCATGGCTTCCG 60
Query 75 AGGCGAATCAGCTTCAGCAAGCGCAACTCGCGATGGTTCTCGGCTCCGATTCCGCGCCCT 134
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 61 AGGCGAATCAGCTTCAACAAGCGCAACTCGCGATGGTTCTCGGCTCCGATTCGGCCCCCT 120
Query 135 TCGAGACGCTAATCTCTCACCTCATGTCTTCTTCCAACGAGCAACGTTCCTCCGCCGAGT 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGAGACGCTAATCTCTCACCTCATGTCTTCTTCCAACGAGCAACGTTCCTCCGCCGAGG 180
Query 195 CTCTTTTCAATCTCGCTAAACAAAGCAATCCCGATACCCTCTCTTTGAAGCTTGCTCATC 254
|||| |||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct 181 CTCTCTTCAATCTCGCTAAGCAAAGCAATCCCGATACCCTCGCTTTGAAGCTAGCTCATC 240
Query 255 TTCTTCAGCTTTCTCCTCATCCCGAAGGTCGTGCTATGGCCGCCGTCCTTCTCCGGAAGT 314
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 241 TTCTTCAGCTTTCTCCTCATCCTGAAGGTCGTGCTATGGCCGCCGTCCTTCTCCGCAAGT 300
Query 315 TGTTAACACGCGACGATGCTTATCTATGGCCTCGTCTCTCCCTCTCCACTCAATCTTCCC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGTTAACACGCGACGATGCTTATCTATGGCCTCGTCTCTCCCTCTCCACTCAATCTTCCC 360
Query 375 TCAAATCTTCGATGTTGTATTGTATTCAACATGAGGAGGCTAAATCGATCTCTAAGAAGA 434
|||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||
Sbjct 361 TCAAATCTTCGATGTTGTCTTGTATTCAGCGTGAGGAGGCTAAATCGATCTCTAAGAAGA 420
Query 435 TTTGCGATACAGTCTCTGAACTTGCATCCGGGATTTTACCGGAGAATGGATGGCCGGAGT 494
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 421 TTTGCGATACAGTCTCTGAACTTGCATCGGGGATTTTGCCGGAGAATGGATGGCCGGAGT 480
Query 495 TGCTTCCGTTTGTTTTCCAGTGTGTTACTTCTG-TTACCCCTAAATTGCAGGAATCGGCG 553
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 481 TGCTTCCGTTTGTTTTCCAGTGTGTTTCTTCTGATT-CCCCTAAATTGCAGGAATCGGCG 539
Query 554 TTTTTAATCTTGGCTCAATTGTCGCAGTACGTTGGGGAGACTCTTACCCCTCACATCAAG 613
|||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 540 TTTTTAATCTTGGCGCAATTGTCGCAGTACGTTGGGGAAACTCTGACTCCTCACATCAAG 599
Query 614 GAACTCCATGGCGTGTTTCTTCAGTGCTTGAGTAGTAATTCTGCTAGCTCCGATGTTAAA 673
||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 600 CTTCTCCATGGCGTGTTTCTCCAGTGCCTGAGTAGTAACTCTGCTAGCTCCGATGTTAAA 659
Query 674 ATCGCCGCTCTCAACGCCGTGATTAGTTTCGTTCAGTGTCTGGCCAACTCAACGGAGAGA 733
||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 660 ATCGCCGCTCTCAACGCTGTGATTAGTTTCGTTCAGTGTCTGTCGAACTCAACGGAGAGA 719
Query 734 GATAGATTCCAAGATGTTTTGCCTGCGATGATCAGGACGTTGACCGAATCTCTGAACAAT 793
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 GATAGATTCCAAGATGTTTTGCCTGCCATGATCAGGACGTTGACCGAATCTCTGAACAAC 779
Query 794 GGGAATGAAGCAACTGCACAGGAGGCACTTGAGCTTTTGATTGAATTGGCTGGTACCGAG 853
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 780 GGGAACGAAGCAACTGCACAGGAGGCTCTTGAGCTTTTGATTGAATTGGCTGGTACTGAG 839
Query 854 CCACGGTTCCTTAGACGGCAACTTGTTGACATAGTTGGTTCGATGCTTCAGATTGCAGAG 913
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 840 CCACGGTTCCTTAGACGGCAGCTTCTTGACATAGTTGGTTCGATGCTTCAGATCGCAGAG 899
Query 914 GCTGATTCCCTCGAGGAGAGTACACGTCATCTTGCGATTGAGTTTTTGGTTACTCTGGCT 973
||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 GCTGATTCCTTGGAGGAAAGTACCCGTCATCTTGCGATTGAGTTTTTGGTTACTCTGGCC 959
Query 974 GAGGCGCGTGAGCGTGCCCCTGGTATGGTCAGGAAGCTTCCTCAGTTTATTGACAGGTTG 1033
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 960 GAGGCGCGTGAGCGTGCCCCTGGTATGGTCAGGAAGCTCCCTCAGTTCATTGACAGGTTG 1019
Query 1034 TTTGCTGTTCTTATGAAGATGCTCGAGGATATTGAGGACGATCCTGCTTGGTACAGCGCT 1093
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTTGCGGTTCTTATGAAGATGCTCGAGGATATTGAGGACGATCCTGCTTGGTACAGCGCT 1079
Query 1094 GAGACTGAGGATGAAGATGCTGGCGAGACAAGCAACTACAGCATGGGTCAAGAGTGTTTG 1153
||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 1080 GAGACTGAGGACGAAGATGCCGGCGAGACCAGTAACTACAGCATGGGTCAAGAGTGTTTG 1139
Query 1154 GATCGGTTAGCAATTTCTCTGGGAGGAAACACCATTGTTCCGGTTGCATATCAGCAGTTT 1213
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GATCGGTTAGCAATTTCTTTGGGAGGAAACACCATTGTTCCGGTTGCATATCAGCAGTTT 1199
Query 1214 TCTGCTTACTTGGCTGCCTCTGAGTGGCAGAAACATCATGCTTCTTTGATTGCACTTGCT 1273
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1200 TCTGCTTACTTGGCTGCCTCTGAGTGGCAGAAACACCATGCTTCTTTGATTGCACTTGCT 1259
Query 1274 CAGATTGCTGAAGGTTGTTCAAAGGTGATGATAAAAAATCTAGACCAAGTGGTGTCAATG 1333
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1260 CAGATTGCTGAAGGTTGCTCAAAGGTGATGATAAAAAATCTAGACCAAGTGGTGTCCATG 1319
Query 1334 GTTTTGAGCCAGTTTCAAAGTCCTCATCCTCGCGTAAGGTGGGCTGCTATAAATGCGATT 1393
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1320 GTTTTGAGCCAGTTTCAAAGTCCTCATCCTCGTGTAAGGTGGGCTGCTATAAATGCAATT 1379
Query 1394 GGACAGTTGTCTACAGATTTGGGTCCAGATTTGCAAAACCAACATCATGAGAGAGTGCTC 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGACAGTTGTCTACAGATTTGGGTCCAGATTTGCAAAACCAACATCATGAGAGAGTGCTC 1439
Query 1454 CCCGCACTTGCTGCTGCTATGGATGATTTCCAGAATCCACGAGTGCAGGCTCATGCTGCT 1513
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CCTGCACTTGCTGCCGCTATGGATGATTTCCAGAATCCACGAGTGCAGGCTCATGCTGCT 1499
Query 1514 TCAGCAGTACTCAACTTCAGTGAAAATTGTACTCCTGAAATATTGTCACCTTATTTAGAC 1573
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1500 TCAGCAGTACTCAACTTCAGTGAAAATTGTACACCTGAAATATTGGCACCTTATTTAGAC 1559
Query 1574 GGAGTAGTGAGCAAGTTACTTGTGCTACTACAAAATGGTAAACAAATGGTGCAAGAAGGA 1633
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGAGTAGTGAGCAAGTTGCTTGTGCTACTACAAAATGGTAAACAAATGGTGCAAGAAGGA 1619
Query 1634 GCTTTAACTGCTCTTGCTTCAGTGGCTGATTCATCACAGGAACACTTTCAAAAGTACTAT 1693
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1620 GCTTTAACTGCTCTTGCTTCAGTTGCTGATTCATCACAGGACCACTTTCAAAAGTACTAT 1679
Query 1694 GATACTGTCATGCCTTATCTCAAAACTATTTTGATGAATGCAACTGACAAGTCTAAGCGG 1753
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GATGCTGTCATGCCGTATCTCAAAACTATTTTGATGAATGCAACTGACAAGTCTAAGCGG 1739
Query 1754 ATGCTTCGTGCCAAATCCATGGAGTGCATCAGTCTTGTTGGAATGGCAGTTGGAAAGGAC 1813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATGCTTCGTGCCAAATCCATGGAGTGCATCAGTCTTGTTGGAATGGCAGTTGGAAAGGAC 1799
Query 1814 AGATTCAAGGAAGATGCTAGACAGGTCATGGAAGTGCTAATGTCATTGCAAGGTTCTCAG 1873
||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1800 AGATTTAAGGATGATGCTAGGCAGGTCATGGAAGTGCTAATGTCATTGCAAGGGTCTCAG 1859
Query 1874 ATGGAGGCAGACGATCCAATAACAAGTTACATGTTACAGGCATGGGCTAGGCTTTGCAAG 1933
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1860 ATGGAGGCAGACGATCCAATAACGAGTTACATGTTACAGGCATGGGCTAGGCTTTGCAAG 1919
Query 1934 TGTCTAGGTCAAGATTTCCTCCCATACATGAAG-GTTGTGATGCCTCCTTTGCTTCAGTC 1992
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1920 TGTCTAGGTCAAGATTTCCTCCCATACATG-AGTGTTGTGATGCCTCCTTTGCTTCAGTC 1978
Query 1993 AGCTCAACTTAAGCCAGATGTAACAATTACATCTGCTGATTCAGAAGATGAAGCAGAGGA 2052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1979 AGCTCAACTTAAGCCAGATGTAACAATTACATCTGCTGATTCAGAAGATGAAGCAGAAGA 2038
Query 2053 TTCTGATGATGAAAGCATGGAGACCATTATCCTGGGCGACAAAAGAATAGGGATCAAAAC 2112
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2039 TTCTGATGATGAAAGCATGGAGACCATTATCCTGGGAGACAAAAGAATAGGGATCAAAAC 2098
Query 2113 AAGTGTTCTAGAGGAAAAGGCCACGGCTTGTAACATGCTTTGTTGCTATGCTGATGAGTT 2172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 AAGTGTTCTAGAGGAAAAGGCCACGGCTTGTAACATGCTTTGTTGCTATGCTGATGAGTT 2158
Query 2173 AAAAGAAGGATTTTTTCCTTGGATTGATCAGGTTGCACCTACATTGGTTCCTTTACTGAA 2232
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2159 AAAAGAAGGATTTTTTCCTTGGATTGATCAGGTTGCACCTACATTGGTTCCTCTACTGAA 2218
Query 2233 ATTCTATTTTCACGAAGAAGTTAGAAGAGCAGCTGTTTCAGCCATGCCGGAACTAATGCG 2292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 ATTCTATTTTCACGAAGAAGTTAGAAGAGCAGCTGTTTCAGCCATGCCGGAACTAATGCG 2278
Query 2293 CTCAGCCAAGCTGGCAATAGAGAAAGGGGAATCTCAAGGGCGAGATCTATCATATTTGAA 2352
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2279 CTCAGCCAAGCTGGCAATAGAGAAAGGGGAATCTCAAGGGCGCGATCTATCCTATTTGAA 2338
Query 2353 GCAGCTTTCTGACTACATTATTCCAGCCATGCTGGAAGCTTTGCATAAAGAACCTGATAC 2412
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 GCAGCTCTCTGACTACATTATTCCAGCCATGCTGGAAGCTTTGCATAAAGAACCTGATAC 2398
Query 2413 AGAGATCTGTGTGAGTATGTTGGAAGCTATCAATGAATGCTTGCAGATCTCTGGAAATCT 2472
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2399 AGAGATCTGTGTGAGTATGTTGGAAGCTATCAATGAGTGCTTGCAGATCTCTGGAAATCT 2458
Query 2473 TTTGGATGAAGGGAAAATTAGATCCATAGTTGATGAGATAAAGCAAGTTATGACCGCAAG 2532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2459 TTTGGATGAAGGGAAAATTAGATCCATAGTTGATGAGATAAAGCAAGTTATGACCGCAAG 2518
Query 2533 CTCTAGTAGGAAGCGAGAGAGGGGAGAGAGGGCCCATGCTGAAGACTTTGACGCTGAAGA 2592
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2519 CTCTAGTAGGAAGCTAGAGAGGGGAGAGAGGGCCCATGCTGAAGACTTCGACGCTGAAGA 2578
Query 2593 GGGAGAGCTTATTAAAGAGGAAAATGAGCAAGAGGAAGAAATTTTTGATCAAGTCGGTGA 2652
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2579 GAGAGAGCTTATTAAAGAGGAAAATGAGCAAGAGGAAGAAATTTTTGATCAAGTTGGTGA 2638
Query 2653 AATATTGGGAACATTGGTTAAGACATTCAAGGCCTCATTTCTACCTTTCTTCGATGAACT 2712
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2639 AATATTGGGAACACTGGTTAAGACATTCAAGGCCTCATTTCTGCCTTTCTTCGATGAATT 2698
Query 2713 GTCCTCTTACTTAACTCCTATGTGGGGAAGAGATAAAACAGCGGAAGAGAGAAGGATTGC 2772
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2699 GTCCTCTTACTTAACTCCTATGTGGGGAAGGGATAAAACAGCGGAAGAGAGAAGGATTGC 2758
Query 2773 TATATGCATTTTTGATGATGTAGCAGAACAATGCCGTGAAGCTGCCTTTAAATATTATGA 2832
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2759 TATATGCATTTTTGATGATGTAGCAGAACAATGCCGTGATGCTGCCTTTAAATATTATGA 2818
Query 2833 TACCTATCTTCCATTTGTACTGGAAGCTTGCAATGACGAGAGCCCAGAGGTTCGACAGGC 2892
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 2819 TACCTATCTTCCATTTGTACTGGAAGCTTGCAATGACGAGAGTCCTGAAGTTCGACAGGC 2878
Query 2893 TGCTGTTTATGGGCTTGGCGTTTGTGCTGAGTTTGGCGGCTCTGTATTCAAGCCTCTTAT 2952
||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 2879 TGCCGTTTATGGGCTTGGTGTTTGTGCTGAGTTTGGCGGATCTGTATTCAAGCCTCTTGT 2938
Query 2953 TGGAGAGGCTCTGTCAAGATTAAATGTTGTGATACAGCTGCCAAATGCTCGGCAATCTGA 3012
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2939 TGGAGAGGCTCTGTCAAGATTAAATGTTGTGATACAGCAGCCAAATGCTCGGCAATCTGA 2998
Query 3013 AAATGCCATGGCATATGATAATGCTGTATCAGCCGTGGGAAAGATCTGCCAATTTCACCG 3072
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 2999 AAATGCCATGGCATATGATAATGCTGTATCCGCTGTGGGAAAGATCTGCCAATATCACCG 3058
Query 3073 TGATAGTATTGATTCTTCTCAGGTACTTCCTGCGTGGTTGAACTGTTTGCCTATAAGCAA 3132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3059 TGATAGTATTGATTCTTCTCAGGTACTTCCTGCGTGGTTGAACTGTTTGCCTATAAGCAA 3118
Query 3133 TGATGTCCTTGAAGCCAAAGTGGTTCATGATCAGCTCTGCTCAATGGTTGAAAGGCAAGA 3192
||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 3119 TGATGTCATTGAAGCCAAAGTGGTTCATGAACAGCTCTGCTCAATGGTTGAGAGGCAAGA 3178
Query 3193 TGTAGACCTTTTAGGCCCCAATAACCAGCATCTTCCGAAAATCTTAATAGTTTTTGCCGA 3252
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3179 TGTGGACCTTTTAGGCCCCAATAACCAGTATCTTCCGAAAATCTTAATAGTTTTTGCCGA 3238
Query 3253 GGTACTTACAGGGAAAGATGTGGTGACACAAGAGACAGCAGGTCGTATGATAAATATATT 3312
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3239 GGTGCTTACAGGGAAAGATGTGGTGACAGAAGAGACAGCAGGTCGTATGATAAATATATT 3298
Query 3313 AAGGCAACTTCAACAGACACTGCCACCATCGGCGTTGGCCTCAACATGGTCAACGCTGAA 3372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3299 AAGGCAACTTCAACAGACACTGCCACCATCGGCGTTGGCCTCAACATGGTCAACGCTGAA 3358
Query 3373 ACCCGAACAGCAGCTCGCTCTCCAATCCATGCTTTCCTCCTAAATTCAATCCAATCCGAT 3432
|||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 3359 ACCCGAACAGCAACTCGCTCTCCAATCCATGCTTTCCTCCTAAAATCACTCCAATCCG-T 3417
Query 3433 CTCTCTGTTTATTTTTACAGTTTTGTGAGCTCTGTTTTCACCACAAAGCGTCGTCAGTTT 3492
||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 3418 CTCTCTGTTTATTTT-ACAGTCTTGTGAGCTCTGTTTTCACCACCGAGCGTCGTCAGTTT 3476
Query 3493 TGCATTTATGTGTTTACAAAAGTGTTTCTTCTTCTTTTGCATTTTTCATCTAATTCTTTT 3552
||||||||||||||||||||| ||||||||| | |||||||||||| |||||||||
Sbjct 3477 TGCATTTATGTGTTTACAAAAAAATTTCTTCTT-TC--GCATTTTTCATCAAATTCTTTT 3533
Query 3553 GGGAGGGATGATGATGGGTCGGTCCATCCTTCAGAAGTTACAAAATGAAAATTTCTATCT 3612
||||||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||
Sbjct 3534 GGGAGGGATGATGATGGGTCGGTCCGTCCTTCACAAGTTACAAAGTGAAAGTTTCTATCT 3593
Query 3613 TTATGGTAGGAAGTGTATATTAGGAGGGAAGGATGAAATTGTTAGTGAAA--TGTGTCAT 3670
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 3594 TTATGGTAGGAAGTGTATATTAGGAGGGAAGGATGAAATTGTTTGTGAAAAATGTGTCAT 3653
Query 3671 TGGG---T-----ATGGTTCCCCAAATACACAGGTCTGCTGTTGGTGTCGGTGTTGGT-T 3721
|||| | |||||||||||||||||||||| || ||||||||| ||||||||| |
Sbjct 3654 TGGGAAATTGGGTATGGTTCCCCAAATACACAGGTTTGGTGTTGGTGTTGGTGTTGGTGT 3713
Query 3722 ---T--GGGTTTGAGAGTGGGATGAAGTTTTGGTGCTTTATACGAGAAGGAACAAAACAG 3776
| ||||||||||| |||||||||||||||||||||||||||||| | || |
Sbjct 3714 CGGTTTGGGTTTGAGAGAGGGATGAAGTTTTGGTGCTTTATACGAGAA--A-CA-----G 3765
Query 3777 AAAGatttgattttgaattttt-gtttttgtatgcaattgggaattttggaagaatgatt 3835
|||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 3766 AAAGATTTGATTTTGAATTTTTTGTTTTTGTATGCAATTGAGAATTTTGGATGAATGATT 3825
Query 3836 cttttCTCTCATTGCCTTTGTTGATTTGTAC--TCTTTTGGACACTCTTCTTTGGCCTTT 3893
|||||||||||||||| ||||| |||||||| |||||||||||||||| | |||||||
Sbjct 3826 CTTTTCTCTCATTGCCATTGTTAATTTGTACACTCTTTTGGACACTCTT-T--GGCCTTT 3882
Query 3894 TCTTAATAAAAGAAATGTCTTTTTT 3918
|||||||||||||||||| ||||||
Sbjct 3883 TCTTAATAAAAGAAATGT-TTTTTT 3906
> Ahg314839 jgi|Araly1|314839|fgenesh1_pm.C_scaffold_1003619
Length=3342
Score = 1134 bits (614), Expect = 0.0
Identities = 2320/3116 (74%), Gaps = 228/3116 (7%)
Strand=Plus/Plus
Query 401 CAACATGAGGAG-GCTAAATCGATCTCTAAGAAGATTTGCGATAC-AGTCTCTGAACTTG 458
||||| || ||| ||||||| || |||||||| |||| ||||| | |||||||||| |
Sbjct 346 CAACAGGA-GAGTACTAAATCTATAGCTAAGAAGGTTTGTGATACTA-TCTCTGAACTCG 403
Query 459 CATCCGGGATTTTACCGGAGAATGGATGGCCGGAGTTGCTTCCGTTTGTTTTCCAGTG-- 516
| || | |||||||||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 404 CTTCTGCGATTTTACCGGAGAATGGATGGCCGGAGTTACTTCCGTTTATGTTCCAGTGCG 463
Query 517 T-GTTACTTCTGTTAC-CCCTAAA-TTGCAGGAATCGGCGTTT-TTAATCTTGGCTCA-A 571
| ||| || ||| || ||| || || ||||||| || ||| || || || || | |
Sbjct 464 TTGTTGCTGCTGATAATCCC-AATCTT-CAGGAATATGC-TTTGTTGATTTTCTCT-AGA 519
Query 572 TTGTCGCAGTACGTTGGGGAGACTCTT-ACCCCTCACATCAAGGA-ACTCCATGGC-GTG 628
||| | |||||| |||| || || || | ||| | | | | | | | ||| | |||
Sbjct 520 TTGGCTCAGTACATTGGTGAAACG-TTGATTCCTTATTTGA-GTACATTACATT-CTGTG 576
Query 629 TTT-CTTCAGT-GCTTGAGTAGTAATTCTGCTAGCTCC-GATGTTAAAATCGCCGCTCTC 685
||| || |||| | ||||| | |||||| | | || | ||||||| ||| | ||| |
Sbjct 577 TTTTCT-CAGTCG-TTGAG-A--AATTCTAC-ATCTGCTGATGTTAGAATTACGGCTTTG 630
Query 686 AACGCCGTGATTAGTTTCGTTCAGTGTCTGGCCAACTCAACGGAGAGAGATAGATTCCAA 745
|| | |||| ||| | |||||| || | || | | || || |||| ||| ||
Sbjct 631 GGTGCTGCCATTAATTTTATCCAGTGTTTGTCAAAGGCTTCCGATAGGGATATATTTCAG 690
Query 746 GATGTT-TTGCC-TGCGATGAT-CAGGACGTTGACCGAATC-TCTGAACAATGGG-AATG 800
||| || ||||| | |||||| || |||||||| || | | |||| ||| || |
Sbjct 691 GAT-TTGTTGCCCTT-GATGATGCAA-ACGTTGACAGAGGCGT-TGAATTCCGGGCAA-G 745
Query 801 AAGCAACTGCACAGGAGGCACTT-GAGCTT-TTGATTGAATTGGCTGGTACCGAGCC-AC 857
||||||| ||||| || || || |||||| || |||||| ||||||||||||| || |
Sbjct 746 AAGCAACAGCACAAGAAGCT-TTAGAGCTTCTT-ATTGAACTGGCTGGTACCGAACCGA- 802
Query 858 GGTTCCTTAGACG-G-CA-ACTTGTTGACATAGTTGGTTCGATGCTTCAGATTGCAGAGG 914
|||| || || | | || | |||| || || |||||||| |||||||||||||| || |
Sbjct 803 GGTTT-TT-GAGGAGACAGA-TTGTGGAAATTGTTGGTTCAATGCTTCAGATTGCGGAAG 859
Query 915 CTGATTCCCTCGAGGAGAGTA-C-ACGTCATCTTG-CGATT-GAGTTT-TTGGTTAC-TC 968
|||| | || || || | | | | ||| ||| | | | || ||| || |||| |
Sbjct 860 CTGAGAGTTTAGAAGA-AGGAACGAGG-CAT-TTGGC-AGTAGAATTTGTTA-TTACAT- 913
Query 969 TGGCTGAGGCGCGTGAGCGTGC-CCCTGGTATGGTCAGGAAGCTT-CCTCAGTTTATTGA 1026
|||||||||| || || | || ||| |||||| | ||||| || || ||||| ||| |
Sbjct 914 TGGCTGAGGCACGAGAAAGAGCTCCC-GGTATGATTAGGAAA-TTGCCACAGTTCATT-A 970
Query 1027 C-AGGTTGTTT-GC-TGTTCTTATGAAGATGCTCGAGGATATTGAGGACGATCCTGCTTG 1083
| | | ||| || |||| ||||| ||||| |||||||||||| || || || ||
Sbjct 971 CCAAACTCTTTAGCGTGTTG--ATGAACATGCTTTTGGATATTGAGGATGACCCCGCATG 1028
Query 1084 GTACAGCGCTGAGACTGAGGATGAAGATGCTGGCGAGACAAGCAACTACAGCATGGGTCA 1143
| |||| || |||| |||||||||||||||||||||||| || || || | | || ||
Sbjct 1029 GCACAGTGCCGAGAATGAGGATGAAGATGCTGGCGAGACCAGTAATTATGGGTTTGGACA 1088
Query 1144 AGAGTGTTTGGATCGG--TTAGCAATTTCTCTGGGAGGAAACACCATTGTTCCGGTTGCA 1201
||| ||| | || | | || || || ||| |||| || || || |||||||| |||||
Sbjct 1089 AGAATGTCTAGA-CAGACTT-GCGATATCTTTGGGTGGGAATACAATTGTTCCTGTTGCC 1146
Query 1202 TATCAGCAGTTTTCT-GC-TTACTTGGCTGCCTCTGAGTGGCAGAAACATCATGCTTCTT 1259
| | | |||||||| | || || || || |||||||||||||| || |||||| ||
Sbjct 1147 TCTGA--AGTTTTCTCGGGTTTTTTCGCAGCTTCTGAGTGGCAGAAGCACCATGCTGCTC 1204
Query 1260 TGATTGCACTTGCTCAGATTGCTGAAGGTTGTTCAAAGGTGATGATAAAAAATCTAGACC 1319
| ||||| ||||| || || |||||||| || |||||||| ||||||||||| || || |
Sbjct 1205 TCATTGCTCTTGCCCAAATCGCTGAAGGCTGCTCAAAGGTTATGATAAAAAACCTGGAAC 1264
Query 1320 AAGTGGTGTCAATGGTTTTGAGC-CAGTTTCAA-AGTCCTCATCCTCGCGTAAGGTGGGC 1377
| ||||| || |||||| ||| | | ||||| | ||| |||||||| || | |||||
Sbjct 1265 AGGTGGTTTCTATGGTTCTGAACTCT-TTTCAGCA-TCCCCATCCTCGTGTCCGATGGGC 1322
Query 1378 TGCTATAAATGCGATTGGACAGTTGTCTACAGATTTGGGTCCAGAT-TTGCAAAACCAAC 1436
|| || ||||| || ||||||||||||||||| || || || | | || |||| | ||
Sbjct 1323 AGCAATTAATGCAATCGGACAGTTGTCTACAGACTTAGGACCTG-TGTTACAAA-CTAAA 1380
Query 1437 -ATCATGAGAGAGTGCTCCCCGCACTTGCTGCTGCTATGGATGA-TTTCCAGAATCCACG 1494
||||| || ||||| || ||||| | || || |||||||| |||| |||| || ||
Sbjct 1381 TATCATCAGTCTGTGCTGCCTGCACTGGTTGGAGCCATGGATGACTTTC-AGAACCCTCG 1439
Query 1495 AGTGCAGGCTCATGCTGCTTCAGCAGTACTCAACTTCAGTGAAAATTGTACTCCTGAAAT 1554
||| ||||| ||||||||||| || || || || |||||||| ||||| ||||| |||||
Sbjct 1440 AGTCCAGGCCCATGCTGCTTCCGCTGTTCTTAATTTCAGTGAGAATTGCACTCCAGAAAT 1499
Query 1555 ATTGTCACCTTATTTAGACGGAGT-AGTGAGCAAG-TTACTTGTGCTACTACAAAATGGT 1612
|| | |||||| | || ||||| | | |||||| || ||||| || || || |||||
Sbjct 1500 TTTAACCCCTTATCTGGATGGAGTTATT-AGCAAGCTT-CTTGTACTGCTTCAGAATGGA 1557
Query 1613 AAACAAATGGTGCAAGAAGGAGCTTTAACTGCTCTTG-CTTCAGTGGCTGATTCATCACA 1671
||||||||||| ||||| || ||||| |||||| ||| | ||||| |||||||| |||||
Sbjct 1558 AAACAAATGGTACAAGAGGGCGCTTTGACTGCT-TTGGCGTCAGTTGCTGATTCTTCACA 1616
Query 1672 GGAACACTTTCAAAAGTACTATGATACTGTCATGCCTTATCTCAAAA-CTATTTTGATGA 1730
||| | || ||||| ||||||||| |||| |||||||| || ||| |||||||| | |
Sbjct 1617 GGAGCTGTTCCAAAAATACTATGATGCTGTTATGCCTTA-CTTGAAAGCTATTTTGGTAA 1675
Query 1731 ATGC-AACTGACAA-GTCTAAGCGGATGCTTCGTGCCAAATCCATGGAGTGCATCAGTCT 1788
|||| || |||||| | |||| || |||||||| || || || ||||||||||| || ||
Sbjct 1676 ATGCCAA-TGACAAAG-CTAATCGCATGCTTCGCGCTAAGTCAATGGAGTGCATTAG-CT 1732
Query 1789 TG-TTGGAATGGCAGTTGGAAAGGACAGATTCAAGGAAGATGCTA-GACAGGTCATGGAA 1846
|| |||||||||| ||||||||||| | ||| | ||| ||||| | | ||||||||||||
Sbjct 1733 TGGTTGGAATGGCTGTTGGAAAGGAAAAATTTATGGATGATGCAAAG-CAGGTCATGGAA 1791
Query 1847 GTGCTAATGTCATTGCAAGGTTCTCAGA-TGGAGGCAGACGATCCAATAACAAGTTACAT 1905
||||| ||||| || |||||||| || | | || | || ||||||| |||||| |||||
Sbjct 1792 GTGCTGATGTCCTTACAAGGTTCGCA-ACTAGAAACGGATGATCCAACAACAAGCTACAT 1850
Query 1906 GTTACAGGCATGGGCTAGGCTTTGCAAGTGTCTAGGTCAAGATTTCCTCCCATACATGAA 1965
|| | || | | || || || || ||||||| ||||| ||||||
Sbjct 1851 ---ACT--C-TG--C-A--------AA-TGCCTTGGAAAAGATTTTCTCCCTTACATGG- 1891
Query 1966 G-GTTGTGATGCCTCCTTTGCTTCAGTCAGCTCAACTTAAGCCAGATGTAA-CAATTACA 2023
| ||||| ||||| ||||||||||| |||||||| |||||||| ||||| | || || ||
Sbjct 1892 GTGTTGTTATGCCCCCTTTGCTTCAATCAGCTCAGCTTAAGCCGGATGTTATCATTT-CA 1950
Query 2024 TCTGCTGATTCAGAAG-ATGA-AGCAGAGGATTCTGATGATGAAAGCATGGAGACCATTA 2081
||||| |||||||| | | || | || || | || ||||| ||||| |||||||| |
Sbjct 1951 TCTGCAGATTCAGATGCA-GATATT-GATGA--C-GAAGATGATAGCATTGAGACCATCA 2005
Query 2082 -TCCTGGGCGACAAAAGAATAGGGATCAAAACAAGTGT-TCTAGAGGA-AAAGGCCACGG 2138
|| ||| ||||| ||||||||||||||||| ||||| | ||||||| |||| | || |
Sbjct 2006 CTCTTGGT-GACAAGAGAATAGGGATCAAAACTAGTGTGT-TAGAGGAGAAAG-CTACTG 2062
Query 2139 CTTGTAACATGCTTTGTTGCTATGCTGATGAGTTAAAAGAAGGATTTTTTCCTTGGATTG 2198
| ||||||||||| ||||||||||| |||||| |||||||||| ||||| ||||||||||
Sbjct 2063 CCTGTAACATGCTGTGTTGCTATGCAGATGAGCTAAAAGAAGGGTTTTTCCCTTGGATTG 2122
Query 2199 ATCAGGTTGCACCTACATTGGTTCCT-TTACTGAAATTCTATTTTCACGAAGAAGTTAG- 2256
|||||||||| |||| || |||||| || || ||||| ||||| || |||||||||||
Sbjct 2123 ATCAGGTTGCTCCTATTTTAGTTCCTCTT-CTCAAATTTTATTTCCATGAAGAAGTTAGG 2181
Query 2257 AAGAGCAGCTGTTTCAGCCATGCCGGAACTAATGCGCTCAGCCAAGCTGGCAATAGAGAA 2316
||| || || || |||| |||||||| || | || ||||| || || || | |||||
Sbjct 2182 AAG-GCTGCAGTATCAGGTATGCCGGAGCTGTTACGTTCAGCTAAACTTGCTGTGGAGAA 2240
Query 2317 AGGGGAATCTCAAGGG-CG-AGATCTATCATATTTGAAGCAGCTTT--CTGACTACATTA 2372
|||||||||||| ||| || | || ||| ||| | ||||| ||| | ||||| || |
Sbjct 2241 AGGGGAATCTCA-GGGTCGTA-ATGAATCCTATATAAAGCA-CTTGAGC-GACTATATAA 2296
Query 2373 TTCCAGCCATGCTGGAAGCTTTGCATAAAGAACCTGATACAG-AGATCTGTGTGAGTATG 2431
| || || || |||| || ||||| || || ||||| | | |||| |||| || |||
Sbjct 2297 TACCGGCGTTGTTGGAGGCCTTGCACAAGGAGCCTGA-AGTGGAGATTTGTGCAAGCATG 2355
Query 2432 TTGGAAG-CTA-TCAATGAATGCT-TGCAGATCTCTGGAAATCTTT-TGGATGAAGGGAA 2487
|||| | | | | || || || | | ||||| |||||| | || | |||||| | |
Sbjct 2356 CTGGA-GTC-ACTAAACGAGTG-TGTACAGATATCTGGACC-CATTCTAGATGAAAGCCA 2411
Query 2488 AATTAGATCCATAGTTGATGAGA-TAA--A-GCAAGTTATGACCGCAAGCTCTAGTAG-- 2541
| || ||| ||||| |||| ||| | ||| || || | || ||||| | ||
Sbjct 2412 GGTGAGGGGCATTGTTGAGGAGACTAAGCACGCA-GTAAT-A--GCTAGCTCAACCAGAC 2467
Query 2542 GAAGCGAGAGAGGGGAGAGAGGGCCCATG-CTGAAGACTTTGACGCTGAAGAGGGAGAGC 2600
| ||||| |||| ||||||| | | | | ||||||||||| || ||||| | |||
Sbjct 2468 GGAGCGAAAGAGAAGAGAGAG--CT-AGGGCAGAAGACTTTGATGCAGAAGAAAGCGAGA 2524
Query 2601 TTATTAAAGAGGAAAATGAGCAAGAGGAAGAAATTTTTGATCA-AGTCGGTGAAATATTG 2659
| ||||||| |||||||| ||||| |||||| |||||||||| | | ||||| || ||
Sbjct 2525 TCCTTAAAGAAGAAAATGAACAAGAAGAAGAAGTTTTTGATCAGATT-GGTGATTTACTG 2583
Query 2660 GGAACATTGGTTAAGACATTCAAGGCCTCATTTC-TACCTTTCTTCGATGAACTGTCCTC 2718
|| || || | || ||||||||| |||| |||| | || | || ||||| || || ||
Sbjct 2584 GGTACGTTAATAAAAACATTCAAGACCTC-TTTCCTGCCCATGTTTGATGAGCTTTCATC 2642
Query 2719 TTACTTAACTCCTATGTGGGGAAGAGATAAAACAGCGGAAGAGAGAAGGATTGCTATATG 2778
|||| ||||||| |||| ||| || |||| |||||| || |||||||| || ||||| ||
Sbjct 2643 TTACATAACTCCCATGTTGGGTAGTGATAGAACAGCAGAGGAGAGAAGAATAGCTATTTG 2702
Query 2779 CATTTTTGATGATGTAGCAGAACAATGCCGTGAAGCTGC-CTTTAAATATTATGATACCT 2837
|| ||||||||||| || || || || || ||||| || ||| ||||| ||||||||||
Sbjct 2703 TATATTTGATGATGTTGCTGAGCATTGTCGCGAAGCAGCTCTT-AAATACTATGATACCT 2761
Query 2838 ATCTTCCATTTG-TACTGGAAGCTTGCAATGACGAGAGCCCAGAGGTTCGACAGGCTGCT 2896
|| ||| ||| | |||||||| ||||||||||||| || |||| |||||||||
Sbjct 2762 -TCGTCCCTTTTCTTCTGGAAGCATGCAATGACGAGAATGTTGATATTCGGCAGGCTGCT 2820
Query 2897 GTTTATGGGCTTGGCGTTTGTGCTGAGTTTGGCGGCTCTGTATTCA-AGCCTCTTATTGG 2955
|| ||||| |||| |||||||||||||||||||| ||||| |||| | |||||| | ||
Sbjct 2821 GTGTATGGAATTGGAGTTTGTGCTGAGTTTGGCGGATCTGTTTTCAGA-CCTCTTGTCGG 2879
Query 2956 AGAGGCTCTGTC-AAGATTAAATGTTGTGATA-CAGC-TGCCAAATGCTCGGCAATCTGA 3012
|||||| || || || ||| ||||||| || || | | || ||||| | ||| |||||
Sbjct 2880 AGAGGCACTCTCCAA-ATTGGATGTTGTCATTGCA-CAT-CCTAATGCACAGCAGTCTGA 2936
Query 3013 AAATGCCATGGCATATGATAATGCTGTATCAGC-CGTGGGAAAGATCTGCCAATTTCACC 3071
|||||||||||| ||||| || ||||| || || | ||| ||| || || || || ||||
Sbjct 2937 AAATGCCATGGCCTATGACAACGCTGTTTCCGCTCTTGGAAAA-ATATGTCAGTTCCACC 2995
Query 3072 GTGATAGTATTGATTCTTCTCAGGTACT-T-CCTGCGTGGTTGAACTGTTTGCCTATAAG 3129
| || ||||||||| || ||| | | | ||||| ||||| ||||| || || ||||
Sbjct 2996 GAGACAGTATTGATGCTGGA-AGG-ATTGTACCTGCCTGGTTAAACTGCTTACCGATAA- 3052
Query 3130 CAATGATG-TCC--TTGAAGCCAAAGTGGTTCATGATCAGCTCTGCTCAATGGTTGAAAG 3186
|| | | | | |||| || ||| | || ||||| ||||| ||||||||||| || ||
Sbjct 3053 -AAGGG-GATACAGTTGAGGCTAAAATTGTCCATGACCAGCTTTGCTCAATGGTGGAGAG 3110
Query 3187 G-CAAGAT-GTAGACCTTTTAGGCCCCAATAACCAGCATCTTCCGAAAATC-TTAATAGT 3243
| ||| | || || ||||| |||||| | ||| | ||||| ||||| || |||
Sbjct 3111 ATCT-GATCGG-GATCTATTAGGGCCCAATCATCAGTACCTTCCAAAAATAGTTGC-AGT 3167
Query 3244 TTTTGCCGAGGTACTTACA-G-GGAAAG-A-TGTGGTGACACAAG-AGACAGC-AGGTCG 3297
|||||| ||||| |||| | || || | | ||| || | | | |||| || | |
Sbjct 3168 TTTTGCTGAGGT-CTTATGTGCGGGGAGTACTCTGGCAACGGA-GCAAACAGTGAG-TAG 3224
Query 3298 TATGATAAATATATTAAGGCAACTTCAACAGACACTGCCACCATCGGCGTTGGCCTCAAC 3357
||||||||||| ||||| || |||||||| ||| || | ||||| ||| | || || ||
Sbjct 3225 GATGATAAATATCTTAAGACAGCTTCAACAAACATTGTCTCCATCAGCGCTCGCATCGAC 3284
Query 3358 ATGGTCAACGCTGAAACC-CGAACAGCAGCTCGC-TCTCCAATCCATGCTTTCCTC 3411
||||||| | ||| |||| | | || ||||| || | | || ||||| || |||||
Sbjct 3285 ATGGTCATCTCTGCAACCAC-AGCAACAGCTTGCAT-TACAGTCCATCCTCTCCTC 3338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148234246835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5