BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19830.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326378 jgi|Araly1|326378|fgenesh1_pm.C_scaffold_6001598 972 0.0
> Ahg326378 jgi|Araly1|326378|fgenesh1_pm.C_scaffold_6001598
Length=657
Score = 972 bits (526), Expect = 0.0
Identities = 619/663 (93%), Gaps = 9/663 (1%)
Strand=Plus/Plus
Query 234 ATGCTGAGTAGGTTGTCAAGGCGTTGCTACTGCACTTCTTCTGTTCATCGGCCATGGCTG 293
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1 ATGCTGAGTATGTTGTCAAGGCGTTGCTATTGCA---CTTCTGTTCATCGGCCATGGCTG 57
Query 294 TTTCTAGGACTGGGCAATCCAGGTGACAAATACAAAGGAACTAGACACAACATTGGATTC 353
||| | ||| ||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 58 TTTTTGGGATTGGGCAATCCAGGGGACAAATACAAAGGGACTAGACACAACATTGGGTTC 117
Query 354 GAAATGATTGATGTTTTCGCTGAGTCAGTGGGGATTCAAATGAACTTGGTAAATTTCAAG 413
||||||||||||||||| |||||||||||||| ||||| |||||| ||||||||||||||
Sbjct 118 GAAATGATTGATGTTTTTGCTGAGTCAGTGGGTATTCAGATGAACCTGGTAAATTTCAAG 177
Query 414 GCTATAATGGGACAAGGTTTCGTGGCA-GATCTTCCC-GTCATCCTTGCAAAACCGCAAA 471
||||||||||||||||||||||||| | |||| |||| || ||||| ||||| |||||||
Sbjct 178 GCTATAATGGGACAAGGTTTCGTGG-ATGATC-TCCCTGTTATCCTGGCAAAGCCGCAAA 235
Query 472 CCTACATGAACTTGAGCGGTGAATCAAGTGGACCTCTCGCAGCTTATTACAAGTTACCTC 531
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 236 CTTACATGAACTTGAGCGGTGAATCAAGTGGACCTCTTGCGGCTTATTACAAGTTACCTC 295
Query 532 TCAATCGTGTGCTTGTGGTTCATGATGACATGCAATTGCCATGTGGTGTTCTTCGTCTTC 591
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 296 TCAATCGTGTGCTTGTGGTGCATGATGACATGCAATTGCCGTGTGGTGTTCTTCGTCTTC 355
Query 592 AAGAAAAAGGAGGCCATGGATGTCACAACGGGTTAAAAAGTGTAATGAACCATTTCCGAG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 AAGAAAAAGGAGGCCATGGATGTCACAACGGGTTAAAAAGTGTAATGAACCATTTCCGAG 415
Query 652 GCAACAGGGAATTTGCAAGGCTACGAATCGGAATTGGAAAGCCTCCGGGACAAATGGACC 711
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 416 GCAACAGGGAATTTGCAAGGCTACGAATCGGAATTGGAAATCCTCCAGGACAAATGGACC 475
Query 712 CAAAGGCGTTCTTGTTGCAGAAGTTCAGCATGCCAGCTCGTGAACGGATGGATAAAGCTT 771
||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 476 CAAAGGCATTCTTATTGCAGAAGTTTAGCATGCCAGCTCGTGAACGAATGGATAAAGCTT 535
Query 772 TAGCAGAAGGGGTGGATGCTCTGAAGCTCGTCTTGGCTAAAGACTTTGGAGAAAGCTGGA 831
|||| ||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 536 TAGCGGAAGGAGTGGACGCTCTGAAGCTGGTCTTGTCTAAAGACTTTGGAGAAAGCTGGA 595
Query 832 GATTGTTCAATGTGGAACAGAAGTACAAACACTTAAAACAACACACAATACTAT-CAGCT 890
|| |||||||||| |||||||||||||||||||||| ||||||||||||| | | |||||
Sbjct 596 GAGTGTTCAATGTTGAACAGAAGTACAAACACTTAAGACAACACACAATAAT-TGCAGCT 654
Query 891 TGA 893
|||
Sbjct 655 TGA 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5