BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19840.2
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488878 jgi|Araly1|488878|fgenesh2_kg.6__2012__AT5G19840.1 1655 0.0
> Ahg488878 jgi|Araly1|488878|fgenesh2_kg.6__2012__AT5G19840.1
Length=1906
Score = 1655 bits (896), Expect = 0.0
Identities = 1085/1172 (93%), Gaps = 29/1172 (2%)
Strand=Plus/Plus
Query 48 ATGCCGACGGGATGCGAGTTTCCGATGA-TCAAAACCTTCGAGAATGCTCTTACTGCCGC 106
||||||| ||||||||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 1 ATGCCGATGGGATGCGAGTTTCCGAAGATTC-AAACCTTCGAGAATGCTCTTTCTGCCGC 59
Query 107 CGACTTCGAGTCTACCGTCGAGCTCACCAACTTCCCAGCAGTTTTTCGGGGATGTGCTAG 166
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 60 CGACTTCGAGTCTACCGTCGAACTCACCAACTTCCCTGCAGTTTTTCGAGGATGTGCTAG 119
Query 167 TGTCTGGGATGCGTATTCTAAGTGGAATCCATTCAACAGTGGCCTCGATTATCTGGAGGA 226
|| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 120 TGACTGGGATGCGTATTCTAAGTGGAATCCATTCAACAGTGGACTTGATTATCTAGAGGA 179
Query 227 ACGTGCAGGTTCAGTTGAAGTGGAGGCAATGCTTTCGAGGACGGCTCCAGTTTTCAATGG 286
|||||||||||||||||||||||||||||||||| | | |||||||||| ||||||| ||
Sbjct 180 ACGTGCAGGTTCAGTTGAAGTGGAGGCAATGCTTACAAAGACGGCTCCAATTTTCAACGG 239
Query 287 TGATATCAGAAGCCATGAGAGGGTGTCATTGCC-TTTCTCGGATTTTATCAGATTCTGCA 345
|||||||||||||||||| ||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 240 TGATATCAGAAGCCATGATAGGGTATCATTGCCGTTT-TCGGATTTTATCAGATTCTGCA 298
Query 346 AGCAGCATATGAGAGGCAAAGGGAATGGTTCTGGTGTTGATGCTAAGTCTGCAGATTTAA 405
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGCAGCATATGAGTGACAAAGGGAATGGTTCTGGTGTTGATGCTAAGTCTGCAGATTTAA 358
Query 406 ATCCTATGTGTGAGGACTATAGACCTGGACAAATATACCTAGCACAGTTTCCAATTCTGA 465
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTCTTATGCCTGAGGACTATAGACCTGGACAAATATACCTAGCACAGTTTCCAATTCTGA 418
Query 466 ATGATGAGAAAGAAGAGAAGGTTCTACTTAAGATTCTGAGACAAGATATCCAGACGCCCA 525
|||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 419 ATGACGAGAAAGAAGAGAAGGTTCAACTTAAGATTCTGAGGCAAGACATCCAGACGCCCA 478
Query 526 CATTTTTAGACGCAAAGTCACTT-TCTTCTATCAACTTTTGGATGAATTCTGCAGAAGCT 584
|| |||||| | ||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct 479 CACTTTTAGGGGAAAAGTCA-TTGTCTTCTATCAACTTTTGGATGAATTCTGCACACGCT 537
Query 585 CGATCAAGTACCCACTATGATCCACATCATAACCTTCTATGCGTAGTCTCAGGGCGTAAA 644
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 538 CGATCAAGTACCCACTATGATCCACATCATAACCTTTTATGCGTAGTTTCAGGGCGTAAA 597
Query 645 AAAGTTGTATTGTGGCCCCCTTCCGCCAGTCCCTCGCTCTACCCGATGCCTATATACGGA 704
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 598 AAAGTTGTCTTGTGGCCCCCTTCTGCAAGTCCCTCGCTCTACCCGATGCCTATATACGGA 657
Query 705 GAAGCATCAAACCATAGTTCGGTTGGTCTAGAAAATCCAAATTTATCAGATTATCCAAGA 764
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAAGCGTCAAACCATAGTTCGGTTGGTCTAGAAAATCCAAATTTATCAGATTATCCAAGA 717
Query 765 GCAGAGCATTCACTGAAGCAGTCACAGGAGATTACTCTTAACGCTGGTGATGCAGTATTC 824
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 718 GCAGAGCATTCCCTGAAGCAGTCACAGGAGGTTACTCTTAACGCTGGTGATGCAGTATTC 777
Query 825 ATTCCTGAAGGTTGGTTCCATCAGGTGGATAGTGATGAACTGACTGTTGCTGTCAACTTT 884
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 778 ATTCCTGAAGGTTGGTTCCATCAGGTGGATAGTGAAGAGCTGACTGTTGCTGTCAACTTT 837
Query 885 TGGTGGCAATCAAACTAT-ATGTCTAACATGCCTGAACACATGGATTCGTATTATCTGCG 943
||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||
Sbjct 838 TGGTGGCAATCAAAC-ATTATGTCTAACATGCATGAACACATGGATTCATATTATCTGCG 896
Query 944 TCGAATCACAAGAAG---------C-----------C-TGTTAGTCTCGAAGCCTTCTTC 982
|||||||||||||| | | ||||||||||||| ||||||||
Sbjct 897 ACGAATCACAAGAAGATTGATAGACAGAGAAATGAGCCTGTTAGTCTCGAAACCTTCTTC 956
Query 983 AACTGATTTAAGGCACCTGTCTGAGCATATTGACCAATCTCGCATTGAGATGGCAGAAGG 1042
|||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 957 AACTGATTTAGGGCACCAGTCTGAGCATATTGACCAATCACACATTGAGATGGCAGAAGG 1016
Query 1043 TGGGAATGATAATATAGGCAATGAAAGCATTAAAAAGGGCCTCAGCACATTGCATGAAAA 1102
||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1017 TGGGAATGATAATTTTGGCAATGAAAGCATTAAAACGGGCCTCAGCACATTGCATGAAAA 1076
Query 1103 AGCGTCGCTGCACGATCTAGATCCTTCTGCTTCCCAGGCGCTTCATGATCTTATTTCTTT 1162
||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1077 AGCTTCGCTGCATGATCTTGATCCTTCTGCTTCCCAGGCGCTTCATGAGCTTATTTCTTT 1136
Query 1163 AGTCCATGACCACGTTAATGCTGTTGATACAA 1194
||||||||||||||||||||||||||||||||
Sbjct 1137 AGTCCATGACCACGTTAATGCTGTTGATACAA 1168
Score = 337 bits (182), Expect = 2e-91
Identities = 192/197 (97%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1424 AACTTTAGAAGCATTAATACTCCACATGCTCTCACCCATTGCTGCGGAAGTTCTAACACA 1483
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AACCTTAGAAGCATTAATACTCCACATGCTCTCACCCATTGCTGCGGAAGTTCTAACACA 1316
Query 1484 GAAGTTTGATGAGATTGACCAACAGACTGGTGAAGAAGATAGGACCCAGTTCTTTCGGGA 1543
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1317 GAAGTTTGATGAGATTGACCAACAGACTGGTGAAGAAGATAGAAACCAGTTCTTTCGGGA 1376
Query 1544 ATTTTATAGTGCATTCGATGATGAAGCAGCTGCGATGGATATAATTTTAAGTAGGAAAGA 1603
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 ATTTTATGGTGCATTCGATGATGAAGCAGCTGCGATGGATATAATTTTAAGTAGGAAAGA 1436
Query 1604 GGCTTTTGCATTTCAGG 1620
| |||||||||||||||
Sbjct 1437 GTCTTTTGCATTTCAGG 1453
Score = 134 bits (72), Expect = 3e-30
Identities = 74/75 (99%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 1279 AAGATGATCGCGTTGCCCATTTGCTTTGGAATCTTGAAGCCTCTAGACTTCGGGATGTTC 1338
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1169 AAGATGATCGCGTTGCCCATTTGCTTTGGAATCTTGAAGCATCTAGACTTCGGGATGTTC 1228
Query 1339 TCCTTGCAATGGCAC 1353
|||||||||||||||
Sbjct 1229 TCCTTGCAATGGCAC 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69057614185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5