BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19855.1
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941535 jgi|Araly1|941535|scaffold_602079.1 1022 0.0
> Ahg941535 jgi|Araly1|941535|scaffold_602079.1
Length=656
Score = 1022 bits (553), Expect = 0.0
Identities = 626/661 (95%), Gaps = 5/661 (1%)
Strand=Plus/Plus
Query 172 TTGCTGTTTGGTTTGGAGTAATGGTGAGTGCTTGGTTTGTTGTTGGCTCACCGGTGATGG 231
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 TTGCTGTTTGGTTTGGAGTAATGGTGGGTGCTTGGTTTGTTGTTGGCTCACCGGTGATGG 60
Query 232 ACTCTTCGAGCAGTCCATGTTTATGTCTGGATGCTCACACGACGGGTACCATCAGGAGGA 291
|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 61 ACTCTTCGAGCAGTCCATGTTTGTGCCTGGATGCTCACACGACGGGTAACATCAGGAGGA 120
Query 292 AGAAGATCCTTGGCAAAGCAAGAAATCTGGAATTAGGAAGCTCTTTCACTGGCTCACGCA 351
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 AGAAGATCCTTGGCAGTGCAAGAAATCTGGAATTAGGAAGCTCTTTTACTGGCTCACGCA 180
Query 352 TTGTTTTTAGGCTTTCTCCGAAGCGTGTATCGAGAATTGCGAATCGAAAGAGCAAAAAGC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGTTTTTAGGCTTTCTCCGAAGCGTGTATCGAGAATTGCGAATCGAAAGAGCAAAAAGC 240
Query 412 TCTTGATTGTGAATGAGGATGTTGCTGGTAATTACGACGATACCTTCGGTGATGTACAAA 471
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 241 TCTTGATTGTGAATGAGGATGTTGCTGGGAATTACGAAGATACCTTCGGTGATGTCCAAA 300
Query 472 AGCAAATTGTTAATTATTTTACATACAAAGCTGTGAGGACGGTTCTTCATCAGCTGTACG 531
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 AGCAAATTGTTAATTATTTCACATACAAAGCTGTGAGGACGGTTCTTCATCAGCTCTACG 360
Query 532 AAATGAATCCTCCTCAATACACTTGGTTCTATAATCATATCATAACAAACAGACCGACGG 591
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 361 AAATGAATCCTCCTCAATACACTTGGTTCTATAATCATATCATAACAAACAAACCAACGG 420
Query 592 ATGGCAAACGTTTCCTCCGTGCCCTCGGCAAGGAGAGTCAGGAGCTTGCAGAAAGAGTGA 651
||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGGCAAACGTTTTCTTCGCGCCCTCGGCAAGGAGAGTCAGGAGCTTGCAGAAAGAGTGA 480
Query 652 TGATCACGCGTCTTCACTTGTATGGCAAATGGATCAAGAAATGCGACCATGGGAAGATAT 711
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 TGATCACGCGTCTTCACTTGTATGGCAAGTGGATCAAGAAATGCGACCATGGGAAGATAT 540
Query 712 ACCAGGAAATATCGGATGAAAACTTGGCGTTGATGCGTGAACGCCTGATGGAGACCGTGA 771
|||| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 541 ACCAAGATATATCGGATGAGAACTTGGCGTTGATGCGTGAACGCCTGATGGAAACAGTGA 600
Query 772 TATGGCCTTCCGATGACACAAACTCAAGGTAATAGGCTGAAGAAGACAGCGCACACCACA 831
|||||||||| |||||| || | |||||| ||||||||||| | || |||||||||
Sbjct 601 TATGGCCTTCTGATGACTCAGA-----GGTAATTGGCTGAAGAAGGCTGCACACACCACA 655
Query 832 G 832
|
Sbjct 656 G 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5