BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19860.1
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326382 jgi|Araly1|326382|fgenesh1_pm.C_scaffold_6001602 865 0.0
> Ahg326382 jgi|Araly1|326382|fgenesh1_pm.C_scaffold_6001602
Length=546
Score = 865 bits (468), Expect = 0.0
Identities = 520/546 (95%), Gaps = 0/546 (0%)
Strand=Plus/Plus
Query 39 ATGGCCCTTTATCCTTTCTTCATCTCAATCTTCATCTTCTCTTTGACCCTCTTCACTACG 98
||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 1 ATGGCCCTTTATCGTTTCTTCATCTCAATCGTCTTCTTCTCTCTGACCCTCTTCACTACG 60
Query 99 ACGACCCATTCCCTCAACGAACCCGACCCGGATTCGATTTCCACCGTTTACGAACTCCTC 158
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACGACCCATTCCCTCTACGAACCCGACCCGGATTCGATTTCCACCGTTTACGAACTCCTC 120
Query 159 CCAAAGTACGGTCTCCCAAGCGGTCTCTTACCGGACACCGTCACCGATTTCACCCTCTCC 218
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CCAAAGTACGGTCTCCCAAGCGGTCTCTTACCGGACTCCGTCACCGATTTCACCCTCTCC 180
Query 219 GACGATGGCCGATTCGTCGTTCACTTGCCCAATTCCTGTGAGATTGAATTTGACTACCTC 278
||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||
Sbjct 181 GACGATGGCCGATTCGTTGTTCACTTGCCCAGTTCCTGCGAAATTGAATTTGACTACCTC 240
Query 279 GTTCACTACGATAAGACCATATCTGGTCGTATCGGTTACGGTTCAATCACCGAGCTCAAG 338
||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 241 GTTCACTACGACAAGACTATATCTGGCCGTATCGGTTACGGCTCAATCACCGAGCTCAAG 300
Query 339 GGTATTCAGGTGAAGAAATTCTTTATTTGGCTCGATGTCGATGAGATCAAGGTCGATCTT 398
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 GGTATTCAGGTGAAGAAATTCTTTATTTGGCTCGATGTCGATGAAATCAAGGTCGATCTT 360
Query 399 CCACCTTCTGATTCAATCTACTTCAAAGTTGGCTTTATCAATAAGAAGCTTGATATTGAC 458
|| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CCGCCGTCTGATTCCATCTACTTCAAAGTTGGGTTTATCAATAAGAAGCTTGATATTGAC 420
Query 459 CAGTTTAAGACTATACATTCTTGTCACGATAATGGTGTCTCTGGCTCTTGTGGAGATTCA 518
|||||||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||
Sbjct 421 CAGTTTAAGACTATACATTCGTGCCACGACAATGGCGTCTCTGGTTCTTGTGGTGATTCA 480
Query 519 TGGAAGAGTTTTCTCGAGAAAGGGCAAGGAATGATGGATGAAGCGGAAATGTTAATCACC 578
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 TGGAAGAGTTTTCTCGAGAAAGGGAAAGGAATGATGGATGAAGCGGAAATGTTAATCACC 540
Query 579 GAGTAA 584
||||||
Sbjct 541 GAGTAA 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31565775276
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5