BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19870.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941537 jgi|Araly1|941537|scaffold_602081.1 1336 0.0
> Ahg941537 jgi|Araly1|941537|scaffold_602081.1
Length=858
Score = 1336 bits (723), Expect = 0.0
Identities = 799/836 (96%), Gaps = 4/836 (0%)
Strand=Plus/Plus
Query 77 TCTCAACCTCCAAAGCTTCAACATGGGAACATTGGTGGGTCACATTTTACCGGGCTTTTT 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCAACCTCCAAAGCTTCAACATGGGAACATTGGTGGGTCACATTTTACCGGGCTTTTT 60
Query 137 CTTCTTTGCACTTGGTCTTTGGCACCTCTTTAACCACATCAAAATATTTTCTCTACACCC 196
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 61 TTTCTTTGCACTTGGTCTTTGGCACCTCTTTAACCACATCAAATTATTTTCTCTACACTC 120
Query 197 AAAATCGTACATAGCACCTTTATGGTTCCCCTTATCGAAACCAAGATATTTAGAGCCTCT 256
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 121 AAAATCATACATAGCACCTTTATGGTTCCCCTTATCCAAACCAAGATATTTAGAGCCTAT 180
Query 257 -TGTGATCATTATAGCCTCCTCACTTTCCATTTCTGTCGAACTCTTCCTTGGCCAAAAGA 315
| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 CT-TGATCATTATAGGCTCCTCACTTTCCATTTCTGTGGAACTCTTCCTTGGCCAAAAGA 239
Query 316 ATCACCAACCATTTGATCCCAATGATGGAACCATCCCATCAAACCATCTCCATAACTTTG 375
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 ATCACCAACCATTTGATCCCAATGATGGAACCATACCATCAAACCATCTCCATAACTTTG 299
Query 376 AACACTCTTGCATCTCCTTCACCTTCATCACCTATGCAGCTTTCGCCATCGTCTTTGATA 435
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 300 AACACTCTTGCATCTCCTTCACCATCATCACCTATGCAGCTTTCGCTATCGTCTTTGATA 359
Query 436 AAACAAGACCAATAGCTCATCGATCCCTCATCAACTTGATCGCGGCCCTCGCCTTCGCCC 495
||||||| ||||| |||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 360 AAACAAGTCCAATGGCTCATCGGGCCCTCATCAACTTGATTGCGGCCCTCGCCTTCACCC 419
Query 496 AACAACTCTTCCTCTTCCATTTCCACTCGTCAGACCACACAGGCGTTGAGGGCCACTACC 555
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 420 AACAACTCTTCCTCTTCCATTTCCATTCGTCAGACCACACGGGCGTTGAGGGCCACTACC 479
Query 556 ATTTATTGCTCCAACTCGTAGTTTTCGTCTCCTTGGTCACAACACTCTTGGGAATCGCCT 615
|||| ||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 480 ATTTGTTGCTCCAAATCGTAGTTTTTGTCTCTTTGGTCACAACACTCTTGGGAATCGCCT 539
Query 616 TACCAAGTAGCTTCATATTGAGTTTTGTTCGGTCACTTAGTGTTTCCTTCCAAGGAATAT 675
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 540 TACCAAGTAGCTTCATGTTGAGTTTTGTTCGATCACTTAGTGTTTCCTTCCAAGGAATAT 599
Query 676 GGCTTATGTCAATGGCTTGCATGCTTTGGACGCCAAGTTTAGTTCCCAAGGATTGTTTCC 735
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 600 GGCTTATGTCAATGGCTTGCATGCTTTGGACGCCAAGTTTGGTCCCCAAGGATTGTTTTC 659
Query 736 TTCACATTGAAGAGGGTAAACACACCATTAGATGCTCA-GACGTCAAAGCTCTTCATAGA 794
|||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 660 TTCACATTGAAGAGGGTAAACATACCATTAGATGCTCAAG-CGTCAAAGCTCTTCATAGA 718
Query 795 GCAATATCATTGGTTAATATCCAATTCAGCTGGTTTCTTGTGATCATAACCATCTTTGCA 854
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCAATATCATTGGTAAATATCCAATTCAGCTGGTTTCTTGTGATCATAACCATCTTTGCA 778
Query 855 ATGTGGTTTTACATATTTTTGCAAAGGATCTACGGTGAGAAAATTGAATACTCTCA 910
||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 779 ATGTGGTTTTATATATTTTTGCAAAGGATCTACGGTGAGAAAATAGAATATTCTCA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5