BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G19875.1

Length=655
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg941538 jgi|Araly1|941538|scaffold_602082.1                        667    0.0  


> Ahg941538 jgi|Araly1|941538|scaffold_602082.1
Length=412

 Score =  667 bits (361),  Expect = 0.0
 Identities = 396/413 (96%), Gaps = 2/413 (0%)
 Strand=Plus/Plus

Query  52   GAGAAGACCAAGAAGAAGGCATGGCTAGATCACCATACTATGGTTCATCTTACTTAGACT  111
            ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  1    GAGAAGATCAAGAAGAAGGCATGGCGAGATCACCATACTATGGCTCATCTTACTTAGACT  60

Query  112  ACCTCT-CTCTCCCAAACCCACATCTCTGTTTCCTCTTCATCGTCGTCTTCTTCGTGTTG  170
            |||| | |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct  61   ACCT-TGCTCTCCCAAACCCACATCTCTGTTTCTTCTTCATCGTCGTCTTTTTCGTGTTG  119

Query  171  TCCTTCACATGGTACTTGAACTTCGAGTCCATCATCGAAGACACCCTGGACCACCTCAAG  230
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||| || || 
Sbjct  120  TCCCTCACATGGTACTTGAACTACGAGTCCATCATCGAAGACACCCTGGACCAGCTTAAA  179

Query  231  CTCGTCTTTATATTCACCCCTCTCTTCCTCCTCCTCCTCGTCCACTTTTTCTCCGGTGGC  290
            ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  180  CTCGTCTTTATGTTCACCCCTCTCTTCCTCCTCCTCCTCGTCCACTTCTTCTCCGGTGGC  239

Query  291  CTCTCCTTCTACGTCCCCTGGCCTGAACAAGACTCCATTCACCGTGCTGGTTCTTCCCCT  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CTCTCCTTCTACGTCCCCTGGCCTGAACAAGACTCCATTCACCGTGCTGGTTCTTCCCCT  299

Query  351  TGGGGCGTAGCAGCCGTGCTCGTGCTCATATTGTTCATGGTTTCGTACCAGTCAGATTTC  410
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  300  TGGGGCGTAGCAGCCGTGCTCGTGCTCATATTGTTCATGGTCTCGTACCAGTCAGATTTC  359

Query  411  CAGGAGAGGTGGTTCCCGTTTGGGGCTAAGTAGATCAATCAAAGTTTATGATG  463
            |||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  360  CAGGAGAGGTGGTTCCCGTTTGGGGCTAAGTAGATCGATCAGAGTTTATGATG  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24017437710


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5