BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19890.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941540 jgi|Araly1|941540|scaffold_602084.1 1576 0.0
Ahg489772 jgi|Araly1|489772|fgenesh2_kg.6__2906__AT4G08770.1 91.6 1e-17
Ahg327109 jgi|Araly1|327109|fgenesh1_pm.C_scaffold_6002329 91.6 1e-17
Ahg489775 jgi|Araly1|489775|fgenesh2_kg.6__2909__AT4G08780.1 86.1 6e-16
> Ahg941540 jgi|Araly1|941540|scaffold_602084.1
Length=1037
Score = 1576 bits (853), Expect = 0.0
Identities = 980/1041 (94%), Gaps = 10/1041 (1%)
Strand=Plus/Plus
Query 17 AGTAAGTCTTTTAAACAAGCTATCTAGA-TAATGAAAACACAAACCAAAGTGATGGGAGG 75
|||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||||||
Sbjct 1 AGTAAGTCTTTTAAACAAGCCATCTAGACT-ATGAAAACACCAACCAAAGTGATGGGAGG 59
Query 76 ACATGTCTTGCTTACTGTTTTCACTCTT-TGTATGCTTTGTTCAGGGGTTAGGGCACAGC 134
|||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 60 ACATGTCTTGCTTACTGTATTCACT-TTGTGTATGCTTTGTTCAGGGGTTAGGGCACAGC 118
Query 135 TAAGCCCTGACATTTATGCTAAATCGTGCCCCAATCTAGTTCAAATTGTCCGTAAACAAG 194
||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||
Sbjct 119 TAAGCTTTGACATTTATGCTAAATCGTGCCCCAATCTTGTGCAAATTGTCCGTAGACAAG 178
Query 195 TTGCCATCGCCCTGAAGGCCGAGATACGGATGGCTGCTTCTCTCATTCGTCTTCATTTCC 254
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 TTATAATTGCCCTGAAGGCCGAGATACGGATGGCTGCTTCCCTCATTCGTCTTCATTTCC 238
Query 255 ACGACTGCTTTGTTAATGGGTGTGATGCGTCGT-TATTGTTGGATGGAGCTGACAGCGAG 313
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 239 ACGACTGCTTTGTTAATGGGTGTGATGCGTC-TGTATTGTTGGATGGAGCTGACAGCGAG 297
Query 314 AAACTCGCGATCCCAAACATTAACTCTGCTAGAGGATTTGAAGTAATTGATACAATCAAA 373
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 298 AAACTCGCGATCCCAAACATTAATTCTGCGAGAGGGTTTGAAGTAATTGATACAATCAAA 357
Query 374 GCCGCTGTGGAAAACGCATGTCCTGGTGTTGTTTCTTGTGCTGATATCCTCACTTTGGCC 433
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 GACGCTGTGGAAAACGCATGTCCTGGGGTTGTTTCTTGTGCTGATATCCTCACTTTGGCC 417
Query 434 GCTCGTGACTCCGTTGTATTGAGTGGAGGGCCTGGGTGGAGAGTGGCATTAGGAAGAAAA 493
||||||||||| ||| | ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 418 GCTCGTGACTCGGTTTTCTTGAGCGGAGGGCCTCAGTGGAGAGTGGCATTAGGAAGAAAA 477
Query 494 GATGGATTGGTGGCAAATCAGAACAGTGCAAACAATCTACCATCTCCTTTTGAACCTTTA 553
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 GATGGATTGGTGGCAAATCAGAACAGTGCAAACAATCTCCCATCTCCTTTTGAACCTTTA 537
Query 554 GACGCCATTATCGCCAAATTTGTAGCCGTAAACCTTAACATCACCGACGTCGTAGCTTTA 613
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GACGCTATTATCGCCAAATTTGTAGCCGTAAACCTTAACATCACCGACGTCGTAGCTTTA 597
Query 614 TCAGGAGCTCACACCTTTGGACAAGCGAAGTGTGCTGTCTTCAGCAACCGTCTGTTCAAC 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCAGGAGCTCACACCTTTGGACAAGCGAAGTGTGCTGTCTTCAGCAACCGTCTGTTCAAC 657
Query 674 TTTACCGGCTT-GGGAAATCCCGACGCAACACTTGAGACATCACTCTTGTCTAATCTGCA 732
|||||||| | ||||| ||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 658 TTTACCGG-TGCGGGAACTCCTGACGCAACACTTGAGACATCACTGTTGTCTAATCTGCA 716
Query 733 AACAGTTTGTCCGCTCGGAGGAAATAGTAACATAACAGCACCTCTTGACAGGAGCACTAC 792
|||||||||||| || |||||||||||||||| |||||| || |||||||||| | ||||
Sbjct 717 AACAGTTTGTCCCCTTGGAGGAAATAGTAACACAACAGCGCCCCTTGACAGGAACTCTAC 776
Query 793 GGACACCTTCGACAACAATTATTTCAAGAACCTGCTTGAAGGAAAAGGTCTTTTGAGTTC 852
|||| |||| ||||||||||||||||||||||| || ||||| |||||||||||||| ||
Sbjct 777 GGACGCCTTTGACAACAATTATTTCAAGAACCTACTCGAAGGGAAAGGTCTTTTGAGCTC 836
Query 853 TGATCAGATTCTGTTCTCGAGTGACTTAGCCGTGAACACCACAAAGAAACTAGTGGAGGC 912
|||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||
Sbjct 837 TGATCAGATTCTGTTCTCGAGTGATTTAGCTGTGAACACAACAAAGAGACTAGTGGAGGC 896
Query 913 TTATAGTCGGAGCCAGAGCTTGTTTTTCAGGGACTTCACATGTGCGATGATCAGAATGGG 972
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 TTATAGTCGGAGCCAGAACTTGTTTTTCAGGGACTTCACATGTTCGATGATCAGAATGGG 956
Query 973 AAACATTTCGAATGGAGCTAGTGGGGAGGTTAGGACA-AACTGCAGGGTTATCAATAATT 1031
||||||| | ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 957 AAACATTGCAAATGGAGCTAGTGGGGAGGTTAGGA-AGAACTGCAGGGTTATCAATAATT 1015
Query 1032 AGCATGTGTGTGTGTTTTCGA 1052
|||||||||||||||||||||
Sbjct 1016 AGCATGTGTGTGTGTTTTCGA 1036
> Ahg489772 jgi|Araly1|489772|fgenesh2_kg.6__2906__AT4G08770.1
Length=1230
Score = 91.6 bits (49), Expect = 1e-17
Identities = 55/58 (95%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 237 TCATTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCGTTATTGTT 294
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 219 TCATTCGTCTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTT 276
> Ahg327109 jgi|Araly1|327109|fgenesh1_pm.C_scaffold_6002329
Length=1041
Score = 91.6 bits (49), Expect = 1e-17
Identities = 53/55 (96%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 240 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCGTTATTGTT 294
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 176 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCATCGATATTGTT 230
> Ahg489775 jgi|Araly1|489775|fgenesh2_kg.6__2909__AT4G08780.1
Length=1041
Score = 86.1 bits (46), Expect = 6e-16
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 240 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCGTTATTGTT 294
|||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 176 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTT 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5