BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G19910.2

Length=1098
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg893922 jgi|Araly1|893922|Al_scaffold_0006_1918                    512    2e-144


> Ahg893922 jgi|Araly1|893922|Al_scaffold_0006_1918
Length=588

 Score =  512 bits (277),  Expect = 2e-144
 Identities = 309/324 (95%), Gaps = 3/324 (1%)
 Strand=Plus/Plus

Query  170  ATGGCTTCGCCAGAGGAGATGGGTGATGATGCATCAGAAATTCCATCCCCGCCAAAAAAC  229
            ||||||||  ||||||||||   ||||||| ||||||||||||||||||||||||| |||
Sbjct  1    ATGGCTTCATCAGAGGAGAT---TGATGATACATCAGAAATTCCATCCCCGCCAAAGAAC  57

Query  230  ACTTACAAGGATCCCGACGGTGGAAGGCAACGATTCTTACTGGAACTTGAATTTATTCAA  289
            |||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct  58   ACTTACAAGGATCCCGACGGTGGAAGACAACGATTCTTACTCGAACTTGAATTCATTCAA  117

Query  290  TGTCTCGCCAATCCTACTTACATCCACTACCTGGCACAGAATCGGTATTTTGAAGATGAA  349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  TGTCTCGCCAATCCTACTTACATCCACTACCTGGCACAGAATCGGTATTTTGAAGATGAA  177

Query  350  GCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCAGAGTACATCAAGTTC  409
            |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  178  GCATTTATTGGATACTTGAAGTATCTTCAATACTGGCAGCGACCTGAATACATCAAGTTC  237

Query  410  ATTATGTACCCACACTGCCTATATTTCCTTGAACTTCTTCAAAACCCCAACTTCAGGACT  469
            |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct  238  ATTATGTACCCACACTGCTTATATTTCCTTGAACTTCTTCAAAACCCCAACTTTAGGACT  297

Query  470  GCTATGGCTCATCCTGCAAACAAG  493
            |||||||| |||||||||||||||
Sbjct  298  GCTATGGCCCATCCTGCAAACAAG  321


 Score =  433 bits (234),  Expect = 2e-120
 Identities = 257/268 (96%), Gaps = 2/268 (1%)
 Strand=Plus/Plus

Query  584  GAATTGGCGCATAGACAACAGTTTTACTATTGGAAGAACTACAGAAACAACAGACTGAAG  643
            |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  322  GAATTGGCACATAGACAACAGTTTTACTATTGGAAGAACTACAGAAACAACAGGCTGAAG  381

Query  644  CACATTCTACCTCGGCCTCTTCCAGAGCCTGTA-CCTCCACAACCACCAGTTGCACCTTC  702
            |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct  382  CACATTCTACCTCGGCCTCTTCCAGAGCCTATAGCC-CCACAACCACCAGTTGCACCTTC  440

Query  703  AACTTCTTTGCCACCTGCACCATCTGCAACTGCTGCTCTCTCTCCAGCCCTTTCTCCAAT  762
            |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct  441  AACTTCTTTGCCACCTGCTCCATCTGCAGCTGCTGCTCTCTCTCCAGCCCTTTCTCCAAT  500

Query  763  GCAGTACAATAATATGCTTTCTAAGAATGACACTAGGAATATGGGTGCTACTGGAATTGA  822
            ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct  501  GCAGTACAATAATATGCTTTCTAAGAATGACACGAGGAATATGGGTGCTGCTGGAATTGA  560

Query  823  TCGTAGGAAGAGAAAGAAGGGTATATAA  850
            ||||||||| ||||||||||||| ||||
Sbjct  561  TCGTAGGAAAAGAAAGAAGGGTACATAA  588



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40905889941


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5