BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19920.1
Length=2484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488887 jgi|Araly1|488887|fgenesh2_kg.6__2021__AT5G19920.1 3291 0.0
> Ahg488887 jgi|Araly1|488887|fgenesh2_kg.6__2021__AT5G19920.1
Length=2328
Score = 3291 bits (1782), Expect = 0.0
Identities = 2150/2321 (93%), Gaps = 51/2321 (2%)
Strand=Plus/Plus
Query 1 AAAAACATGAGGTTCCAAAATTGAAA-AGACGAGAGGGAAAAAGCAATCCCCACTACGCA 59
||||| ||| |||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1 AAAAA-ATGTGGTTCCAAAATTGAAACA-ACGAGAGGGAAAAATCAATCCCCACTACGCA 58
Query 60 CGATCGGGCGGGAATAAAAGGGTG-GGAAGAAGACGAACCGAGTCTGCAATGGCTACGAC 118
|||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||
Sbjct 59 CGATCGGGCGGGAATAAAAGGGTGAGGAGGAAGACGAACGGAGACTGCAATGGCTACGAC 118
Query 119 GGCGATGAATAAACCTAAAATTGAACAAGGGGAAGAAGTAGAAGTAGAAGCAGAAGCGAG 178
||||||||| |||||||||||||||||| ||| | | |||||||||||||||||||||
Sbjct 119 GGCGATGAACAAACCTAAAATTGAACAA-GGG--G-A--AGAAGTAGAAGCAGAAGCGAG 172
Query 179 AACGTTCTCGACTCAAATCCCAGATGATAGAGAAGCTCTTTTAGAGTTTATGGACCAGCG 238
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 173 AACGTTCTCGACTCAAATCCCAGATGATAGAGAAGCTCTTTTAGAGTTCATGGACCAGCG 232
Query 239 TGCCAAATCAATCCAACGCCTTAAAGACCAAATCTCAAGTTTGGATAGGAAGCTTGCTGA 298
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 233 TGCCAAATCAATCCAACGCCTTAAAGACCAGATTTCAAGTTTGGACAGGAAGCTTGCTGA 292
Query 299 AGAGAGAAAACTGATGGCAGATGCGGAGGCTAAATTTTTACAAATTGATCGTGTTGGAAA 358
|||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||
Sbjct 293 AGAGAGAAAACTGATGGCAGATGCTGAGGCGAAATTTTTAAAAATTGATCGTGTTGAAAA 352
Query 359 TGGTATCTTTTCTAAGTCAAAACCAAAAGCGCCTGGTAAAACTGGAAGTATACTTGGTAT 418
||||| |||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 353 TGGTACCTTTTCTAAGCCAAAACCTAAAGTGCCTGGTAAAACTGGAAGTATTCTTGGTAT 412
Query 419 AGCAGAGTTCTGGAACGAGGGAAATAAGACGAAGACTGCCAATGAAAACTCTACTCCACA 478
|||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 413 AGCAGAGTTCTGGACCGAGGGAAATAAGGCAAAGACTGCCAATGAAAACTCTACTCCACA 472
Query 479 ATCACCTAGTGAGATGGAATCCTTGAAATTGCCATCCATTATCTTACCGCCTTCTTTTAA 538
||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 473 ATCACGTAGTGAGATGGAATCCTTGAAAATGCCATCCATTATCTTACCCCCTTCTTTCAA 532
Query 539 ACGAAGAGCTTCTGCTACCGTCAGAGCTGAAGTAAATGAGACCACCCAAGCTCAACCCAT 598
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 533 ACGAAGAGCTTCTGCTCCCGTCAGAGCAGAAGTAAATGAGACCACCCAAGCTCAACCCAT 592
Query 599 GGCTACAAGGGATTATAACATTCCAAGGGAAGACACATGTGGCCCCGAGGCCAAGAGACC 658
||||||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||
Sbjct 593 GGCTACAAGGGATTATAACATCCCAAAGGAAGACACAAGTGGCCCTGAGGCCAAGAGACC 652
Query 659 TCGTAGTATTCCTGATGAAGTGGTAAGGGAAACCCAAGATCGAGATAAGGAAACTCAACC 718
||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||
Sbjct 653 TCGTAGTATTCCTGATGAAGTAGTAAGGGAAACCCAAGGTCGAGAGAAGGAAGCTCAACC 712
Query 719 CATGGCTACGAGGGGTTATGATGTTCCAAAAGAAGATAAAAGTGGCCCTGAGGCCAGGAG 778
||||||||||| || |||| | |||||||||||||| |||| || ||||||||||| |||
Sbjct 713 CATGGCTACGATGGATTATAACGTTCCAAAAGAAGACAAAAATGTCCCTGAGGCCAAGAG 772
Query 779 ATT-GCGGAGTATTCCTGATGAAGTGGTGAGGGAATCCCAAGGTCGAGATAACGCAGCTC 837
|| | ||||||||| |||||||| | ||||||||||||||||| ||||||| |||||
Sbjct 773 -TTCTCATAGTATTCCTAATGAAGTGATAAGGGAATCCCAAGGTCGCGATAACGTAGCTC 831
Query 838 AGCCCATGGCTACAAGGGATTCTAATGTCCCAAAGGAAGACAAAAGTGGTCTTGA---CA 894
| ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| ||
Sbjct 832 AACCCATGGATACAAGGGATTATAATGTCCCAAAGGATGACAAAAGTGGTCTTGAGGCCA 891
Query 895 AGAGATCTCGTAGTATTCCTAATGAA---GT-T--G---CTCAAGCTC-----C-AGATA 939
|||||||| ||||||||||||||||| || | | ||||||||| | |||||
Sbjct 892 AGAGATCTTGTAGTATTCCTAATGAAGTGGTGTGGGAAACTCAAGCTCAAGTTCGAGATA 951
Query 940 ACCACACTAATAAGGATTTGGCAAAGCCAAGGATCAGAGTTTCTTCTAACATT-TCTCAA 998
||||||||||||||||||| |||||||| ||||||||||||||||||||| || || |||
Sbjct 952 ACCACACTAATAAGGATTTTGCAAAGCCGAGGATCAGAGTTTCTTCTAAC-TTATCCCAA 1010
Query 999 CAAGGACAACAGGAAAAAT-CTGAATTCCGAGGACATGATGAGTTGATAGCACTTATAGG 1057
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CAAGGACAACAGG-AAAATGCTGAATTCCGAGGACATGATGAGTTGATAGCACTTATAGG 1069
Query 1058 TAGAAGCTCTTTGCGTCCCACAATTGAAGGCCGTACTGCCGGCATGCTACCAAGTTGCCA 1117
|||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1070 TAGAAGCTCTTTGCGTCCCACAATTGAAGGTCGTACTGTAGGTATGCTACCAAGTTGCCA 1129
Query 1118 CACGAAAAGAATGAGAAGTCTTGCTCTTTCTCCTTCCAACCGTGAGCTATTTGCTACAAG 1177
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1130 CACGAAAAGAATGAGAAGTCTTGCTATTTCTCCTTCAAACCGTGAGCTATTTGCTACAAG 1189
Query 1178 TGCATTGGATGGGGCTGTTCATTTCTGGAAGCTTCAGTCTGATAGGTCCACCGCTACTTT 1237
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1190 TGCATTGGATGGGGCAGTTCATTTCTGGAAGCTTCAGTCTGATAGGTCCACAGCTACTTT 1249
Query 1238 GTTTAAGACGGTTAATCGGGTAGCAGTAGATCAGAAGAAATGGGCAGAAGATATAGCTTG 1297
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1250 GTTTAAGACGGTTAATCGGGTAGCAATAGATCAGAAGAAATGGGCAGAGGATATAGCTTG 1309
Query 1298 GCATCCACATAAGAATGCACTTTTCTCCGTGTATACTGCAGATGATGGTCACCCTCAGAT 1357
||||||||| |||| |||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1310 GCATCCACACAAGAGTGCACTTTTCTCTGTGTATACTGCAGATGAAGGTCACCCTCAGAT 1369
Query 1358 ATCAGCCATATATCTGAATGAAGCTGGAGAGAGATGTGAGTCGCAATTTATGGAGGACAG 1417
||||||||||||||||||||||||||||||||| ||| |||| |||||| |||||| |||
Sbjct 1370 ATCAGCCATATATCTGAATGAAGCTGGAGAGAGTTGTAAGTCACAATTTCTGGAGGGCAG 1429
Query 1418 GCCTCATAGCAAAGGTCTTATCAACAGAATCATGTTTACGCCTTGGGATGATCCTTGCTT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1430 GCCTCATAGCAAAGGTCTTATCAACAGAATCATGTTTACGCCTTGGGATGATCCTTGTTT 1489
Query 1478 CATCACAGGTGGGAGTGACCATGCAGTAGTGTTATGGCGGGATCAGTGTGAGAATAATGC 1537
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1490 CATCACAGGTGGGAGTGACCATGCAGTAGTGTTATGGCGGGATCAATGTGAGAATAATGC 1549
Query 1538 GTGGAAGCCGACGCTTCTGCATAGGGACTTGCATTCGTCGGCTGTGATGGGAGTTACTGG 1597
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1550 GTGGAAGCCAACGCTTCTGCATAGGGACTTGCACTCATCGGCTGTGATGGGAGTTACTGG 1609
Query 1598 AATGCGCCATAACAATCACGTCTTGTCATGTGGAGACGATAGGAGATTTGTTGGGTTTGA 1657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 AATGCGCCATAACAATCTCGTCTTGTCATGTGGAGACGATAGGAGATTTGTTGGGTTTGA 1669
Query 1658 TGCCCGAGAAGAAAAAGTCACATTTAAACATAGACTAGACAACAGATGCACAAATATAAT 1717
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 1670 TGCCCGAGAAGAAAAAGTCACGTTTAAACATAGACTAGACAACAGATGCACTAATATACT 1729
Query 1718 GCCAAACCCGCGAGATGTTAATCTTGTCATGGTTAACACGAGGCAGCTAGACCGGCAACT 1777
||||||||| || ||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1730 GCCAAACCCACGGGATGTTAATCTTGTCATGGTTCACACAAGGCAGCTAGACCGGCAACT 1789
Query 1778 GCGGTTGTATGATGTTAGATTGCCTCAGACAGAACTATTTTCTTTTGGGTGGAAGCAAGA 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GCGGTTGTATGATGTTAGATTGCCTCAGACAGAACTATTTTCTTTTGGGTGGAAGCAAGA 1849
Query 1838 AAGCAGTGAATCGCAGTCGGCTCTAATTAATCAGTCTTGGTCTCCAGATGGTTTACACAT 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 AAGCAGTGAATCGCAGTCGGCTCTAATTAATCAGTCTTGGTCTCCAGATGGTTTACACAT 1909
Query 1898 CTCATCTGGTTCTGCAGACCCCGTGATCCACATCTTTGATATCCGATACAATGCACCGAG 1957
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 1910 CTCATCTGGTTCTGCAGACCCTGTGATCCACATATTTGATATCCGCTACAATGCACCGAG 1969
Query 1958 CCCGTCTCTCTCGATGAAAGCTCATAAGAAAAGAGTGTTCAAAGCCGAGTGGCACTCTTC 2017
|| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1970 TCCATCTCTCTCGATGAAAGCTCATAAGAAAAGAGTGTTTAAAGCGGAATGGCACTCTTC 2029
Query 2018 TTATCCGCTGCTCGTCTCCATCTCATCAGATTTAGCAATTGGGATTCACAAGCTATGGTG 2077
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2030 TTATCCGCTGCTTGTCTCCATCTCATCAGATTTAGCAATAGGGATTCACAAGCTATGGTG 2089
Query 2078 AAAACTTGT-AAAGCCATCACCT---GAAT-TT-GAAGGCCATTAACTTCTGAAACAGAA 2131
|||||| || ||||||||||||| |||| || |||||||| |||||||||||||||||
Sbjct 2090 AAAACT-GTTAAAGCCATCACCTCCTGAATATTTGAAGGCCAGTAACTTCTGAAACAGAA 2148
Query 2132 CTTGTCTTGGCAAGTTG-GCACAAGGTGTTGATTGGCAAGTAAGAACT-GAGTACAGCAC 2189
||||||||| ||||||| | ||||||||||||||||||| |||| || || |||||||
Sbjct 2149 CTTGTCTTG-CAAGTTGTGG-CAAGGTGTTGATTGGCAAGGAAGA-CTCGACCACAGCAC 2205
Query 2190 GCAGGCTGGATACGAAAACTGTCT-T---GGGAGTTGCATAGGTCAGTCC-AGGGTCTGA 2244
||| |||||||| ||||||| || | |||||||| |||||||||||| |||||||||
Sbjct 2206 GCACACTGGATACAAAAACTGACTGTATTGGGAGTTGAATAGGTCAGTCCCAGGGTCTGA 2265
Query 2245 TGGCTCTTGTCTTTTGAtttttttttttAACTGTGGGAAAC 2285
|||||| || | || ||||| ||| |||||| ||||||||
Sbjct 2266 AGGCTCTGGTATGTTAATTTTGTTTGTTAACTTTGGGAAAC 2306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93625822210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5