BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19930.1
Length=1226
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488888 jgi|Araly1|488888|fgenesh2_kg.6__2022__AT5G19930.1 1471 0.0
> Ahg488888 jgi|Araly1|488888|fgenesh2_kg.6__2022__AT5G19930.1
Length=1090
Score = 1471 bits (796), Expect = 0.0
Identities = 913/970 (94%), Gaps = 5/970 (1%)
Strand=Plus/Plus
Query 13 CCCGACGCTGAACTGAATCTTCGTCGTCAACAGATTCTCCGCCACTGGAAGAAATGGAAA 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCGACGCTGAACTGAATCTTCGTCGTCAACAGATTCTCCGCCACTGGAAGAAATGGAAA 60
Query 73 CGTCGCCGCAATTCAGACTTATCTTCGCCGTAATCATTTCTTCTCTCATCGCTTTCCGAT 132
||||||||| || || |||||| ||||||| |||||||||||||||||||||||||||
Sbjct 61 TGTCGCCGCAGTTTAGGCTTATCGTCGCCGTCGTCATTTCTTCTCTCATCGCTTTCCGAT 120
Query 133 CGTACAAGCGGAAGTCGCTCGATCTCTCCGGTGGAATTGCTGGATTCCTCGTTATGACCA 192
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 CGTACAAGAGGAAGTCGCTCGATCTCTCCGGTGGAATTGCTGGATTCCTTGTTATGACCA 180
Query 193 TTCACTTCACCGCCGGTTTCAGGTACGGAGCTCTGCTGCTTGTATTCTTTCTTACTTCCT 252
| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TCCATTTCACCGCCGGTTTCAGGTACGGAGCTTTGCTGCTTGTATTCTTTCTTACTTCCT 240
Query 253 CGAAACTTACCAAAGTTGGCGAAGATaaaaaaaGACGCGTTGATGTTGAGTTCAAAGAAG 312
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CGAAGCTTACCAAAGTTGGCGAAGATAAAAAACGACGCGTTGATGTTGAGTTCAAAGAAG 300
Query 313 GTGGACAAAGGAACTGGGTACAAGTGCTATGCAATAGTGGAATTGCTTCAGTTCTAGTTG 372
|||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 301 GTGGACAAAGGAACTGGGTACAAGTGCTTTGCAATGGTGGAATTGCATCAGTTCTAGTTG 360
Query 373 TAATTGCTTGTACTTTAACGGGTTGGAAGGACAAGTGTTTGGACTCGAAGCAGTCAGAAA 432
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TAATTGCTTGTACTTTAACGGGTTGGCAGGACAAGTGTTTGGACTCGAAGCAGTCAGAAA 420
Query 433 TTGTAACAGCTCTTATTGGTGGGATCATTGGTCATTACGCCTGCTGTAATGGAGACACTT 492
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 421 CTGTAACAGCTCTTATTGGTGGGATCATCGGTCATTACGCGTGCTGTAATGGAGACACTT 480
Query 493 GGTCCTCAGAGCTTGGGGTTCTTAGTGATGCCCAGCCTCGACTAATCACAACGTTTAAGC 552
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 481 GGTCCTCAGAGCTTGGGGTTCTTAGTGATGCCCAGCCTCGACTAATCACAACGCTAAAGC 540
Query 553 CGGTGAAGAAGGGCACAAATGGTGGAGTTACAAAGGCAGGACTCTTAGCTGCCTTGGCAG 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGGTGAAGAAGGGCACAAATGGTGGAGTTACAAAGGCAGGACTCTTAGCTGCCTTGGCAG 600
Query 613 CAGGCACCACTGTTGGATTAACATTCCTTATCTTCGGACTCTTTACCGCGAGTTGTGCAA 672
| ||||||||||||||| |||| ||||| ||||| ||| |||||||||||||||||||||
Sbjct 601 CCGGCACCACTGTTGGAGTAACGTTCCTCATCTTTGGATTCTTTACCGCGAGTTGTGCAA 660
Query 673 GTGATGTAGCTCTAAAGCAACTCTTAGTCATACCACTCTCTGCACTAGCTGGACTATGTG 732
||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||| ||||||
Sbjct 661 GTGATGTGGCTCTCAAGCAACTCTTAGTCATTCCAGTCTCTGCATTAGCTGGATTATGTG 720
Query 733 GGAGTCTTATTGATTCTATACTAGGAGCAACCATTCAATTCAGTGGTTTCTGCTCTGTCC 792
||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||||||
Sbjct 721 GGAGTCTTATTGATTCTGTGCTAGGAGCAACCATCCAATTCAGTGGTTTCTGTTCTGTCC 780
Query 793 GGAACAAGGTTGTAGGGAAACC-GGGTCCAACCGTAAAGAAGATTTCAGGTGTGGACATT 851
|||||||||||||||||||||| ||| || || |||||||||||||||||||| ||||||
Sbjct 781 GGAACAAGGTTGTAGGGAAACCCGGG-CCGACGGTAAAGAAGATTTCAGGTGTAGACATT 839
Query 852 CTTGACAACAATGGTGTGAACTTTGTCTCCATACTCTTGACATCTTTTCTGACTTCCATT 911
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 840 CTTGACAACAATGGTGTGAACTTTGTTTCCATACTATTGACATCTTTTCTGACTTCCATT 899
Query 912 GCTTCTGTGTACATTTTCTGAATGA-TGAA-GCTACCAACCTGTTTTCTTGACTAGACTG 969
||||| ||||||||||||||||| | | || |||| || |||||||||| || ||||||
Sbjct 900 GCTTCAGTGTACATTTTCTGAAT-ACTAAAAGCTAGCAGTCTGTTTTCTTCACCAGACTG 958
Query 970 TTTTAGATTT 979
||||| ||||
Sbjct 959 TTTTAAATTT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45785623317
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5