BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19940.1
Length=1085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941545 jgi|Araly1|941545|scaffold_602089.1 1164 0.0
> Ahg941545 jgi|Araly1|941545|scaffold_602089.1
Length=763
Score = 1164 bits (630), Expect = 0.0
Identities = 721/765 (94%), Gaps = 6/765 (1%)
Strand=Plus/Plus
Query 49 cttactctctcCAGAGCAACAATGGCTGCGACTGCTTCTTCTCTTACAATCGCGTCGTCA 108
||| ||||||| ||||||||||||||| || |||||||||| |||||||||||||| ||
Sbjct 1 CTT-CTCTCTCTAGAGCAACAATGGCTTCGGCTGCTTCTTCCCTTACAATCGCGTCTTCC 59
Query 109 TTCTCCGAACCACGGACTCAGATCCATTCCTCG-AGACGTTTGAATCTCCCTCTTCAATA 167
|||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 60 CTCTCCGAACCACGGACTCAGATCCATTCCTCGAAG-CGTTCGAATCTCCCTCTTCAATA 118
Query 168 TTCAATCCCGTACAAGG-TGT--TACGGAGTAGGAGTAGAAGATTAGGACTCGTCGTCAG 224
||||||||||||||||| || |||||| |||| ||||||||||||||||||||| ||
Sbjct 119 TTCAATCCCGTACAAGGCCGTAACACGGAGCAGGACTAGAAGATTAGGACTCGTCGTGAG 178
Query 225 TTCTGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 284
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTCCGTTTCAGCTCCCAACGTTGAGCTCCGTACTGGACCTGATGATCTCATTTCTACCCT 238
Query 285 CCTCTCTAAGGTTGCGAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 344
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CCTCTCTAAGGTTGCAAATAGTGATGGAGGTGTGACGCTAAGCCCTGAGCAGCACAAGGA 298
Query 345 GGTGGCACAAGTGGCCGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTCAAAAATCC 404
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 299 AGTGGCACAAGTGGCTGGAGAGCTTCAAAAGTACTGTGTCAAGGAGCCTGTTAAAAACCC 358
Query 405 TCTCATTTTTGGAGATTGGGAAGTGGTGTACTGTTCTAGACCAACCTCTCCTGGTGGAGG 464
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 359 TCTCATTTTCGGAGATTGGGAAGTGGTGTACTGTTCTAGACCGACCTCTCCTGGTGGAGG 418
Query 465 CTACAGAAGCGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGATACAAGCCATCGA 524
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 419 CTACAGAAGTGTGATAGGCCGTCTCTTCTTCAAAACGAAAGAGATGGTACAAGCCATCGA 478
Query 525 TGCTCCTGATATCGTTAGGAACAAAGTTTCCATTAATGCTTTTGGTTTTCTAGACGGAGA 584
||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||
Sbjct 479 TGCTCCTGATATCGTTAGGAACAGAGTTTCCATCAATGCTTTTGGTTTTCTTGACGGAGA 538
Query 585 CGTCTCCTTGACAGGGAAGCTGAAAGCGTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 644
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 TGTCTCCTTGACAGGGAAGTTGAAAGCCTTGGACAGTGAGTGGGTGCAGGTGATATTTGA 598
Query 645 GCCTCCGGAAATCAAGGTTGGATCTTTGGAGTTCAAATACGGGTTCGAAAGCGAAGTGAA 704
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 599 GCCTCCGGAAATCAAGGTTGGATCTTTGGAATTCAAATACGGGTTTGAAAGCGAAGTGAA 658
Query 705 GCTTCGGATCACATACGTTGATGAGAAACTTAGGTTGGGATTGGGATCTAAAGGATCATT 764
||||||||||||||| ||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 659 GCTTCGGATCACATATGTTGATGAGAAACTTAGACTGGGATTAGGCTCTAAAGGATCATT 718
Query 765 GTTCGTCTTTAGAAGGCGTCAATAATATATACGTTTCTCCCTCGT 809
|||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 719 GTTCGTCTTTAGGAGGCGTCAATAATATATATGTTTCTCCCTCGT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40410292020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5