BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19950.1
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488891 jgi|Araly1|488891|fgenesh2_kg.6__2025__AT5G19950.2 2109 0.0
> Ahg488891 jgi|Araly1|488891|fgenesh2_kg.6__2025__AT5G19950.2
Length=1627
Score = 2109 bits (1142), Expect = 0.0
Identities = 1317/1402 (94%), Gaps = 10/1402 (1%)
Strand=Plus/Plus
Query 39 CAATTGGTTTAGCGCGACAAGAGCATCAACGCAATGGTGGGAACATCAAGCTCCTCCGCC 98
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1 CAATTGGTTTAGCGCGACAAGAGCATCGACGCAATGGAGGGAACATCAAGCTCCTCCGCC 60
Query 99 GGCGACCACACCCACACCGTCGTGATAAATGCCCTAACTAGTCGGGGCTGGTGCTTCAGA 158
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCCGGCCACACCCACACCGTCGTGATAAATGCCCTAACTAGCCGGGGCTGGTGCTTCAGA 120
Query 159 GACGTCGAATACTTGAAATCCCTGGTCACTGAAATCTCTTCCTTGATCGGCGGCGGCAAT 218
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || |||
Sbjct 121 GACGTCGAATACTTGAAATCTCTGGTCACTGATATCTCCTCCTTGATCGGCGGTGGTAAT 180
Query 219 AAAACAGGCGCCATCGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 278
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAACAGGCGCGGTTGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 240
Query 279 ATCGGAGGTAAATCCCTCCCGGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 338
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGGAGGTAAGTCCCTCCCAGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 300
Query 339 CCCAAAGTTCTCCAGATAAGTTATGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 398
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 CCCAAAGTTCTCCAGATAAGTTCTGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 360
Query 399 GTGGGAAGTTCCACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGACGGGAAGACCGAA 458
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 361 TTGGGAAGTTCTACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGATGGCAAGACCGAG 420
Query 459 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTCACTCCTGGTACT 518
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 421 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTAACCCCTGGTACT 480
Query 519 AAGGTACGTCTAGAAAATAAGGCTGTGATACGTGATGGTCTAGTATGTTTGACTCCAAAA 578
||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||
Sbjct 481 AAGGTCCGTCTAGAAAATAAGGCTGTGATACGTGACGGTTTAGTATGTTTGACTCCGAAA 540
Query 579 GAGGTGACTGTCTTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 638
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGGTGACTGTATTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 600
Query 639 AAATACGCTAGTTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGATGGCCCTCCTCCATTT 698
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 601 AAATATGCTAATTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGTTGGCCCTCCTCCATTT 660
Query 699 GAGGAGTTGAAGATTCGAACAGGTTCCCATCACCGCGATTACAACAAGACGACTTCTAGA 758
||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 661 GAGGAGTTGCAGATTCGAACAGGTTCCCATCACCGGGATTACAACAGGACGACTTTTAGG 720
Query 759 AACAATGTACCTATTGCTGCAGAAAGCTCTGTAAAACATGCCGGTGGAGAAAAAGGTGAA 818
|||| |||||||| |||||||||||||| ||||||||| || |||| ||||| |||||||
Sbjct 721 AACATTGTACCTACTGCTGCAGAAAGCTATGTAAAACACGCTGGTGTAGAAAGAGGTGAA 780
Query 819 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAAATAAGAATATACAGAGGAATCCTGCA 878
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 781 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAGATAAGAATATACAGAGGAATCCTGCA 840
Query 879 GATTCTGATCCGAAAATATCTGTCGAAGTTGAAAATCAGGAAAAGCGAAGCAGTTCCGAT 938
||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||| |||
Sbjct 841 GATTCTGATCCAAAAATATCTGTCAAAGTCGAAAATCAGGAAAAGCCAAGCAGTTCTGAT 900
Query 939 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 960
Query 999 CTTCTTGAGAAGATGAAACATTCTAGTTCAAATGAT-AGGCAATACCaaggaagaagagg 1057
||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 961 CTTCTCGAGAAGATGAAACATTCAAGTTCAAATGACCAG-CAATACCAAGGAAGAAGAGG 1019
Query 1058 tag-gg--g---tagaggtagaggtagagggagggggagagaagaagaagaCTCTGCAGT 1111
||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TAGAGGTAGAGGTAGAGGTAGAGGTAGAGGGAGGGGGAGAGAAGAAGAAGACTCTGCAGT 1079
Query 1112 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGTgggggggCTCTTCCAACAGCTAA 1171
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |
Sbjct 1080 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGCAGGGGAGTTCTTCCAACAGCTGA 1139
Query 1172 CCATCCAAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1231
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CAATCCGAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1199
Query 1232 TCTGGAAGACTCTTATGGGCAGGAGATGC-CTGGAGCCGGGGCAGCGGATATCAGAATGA 1290
||||||||| ||||||| ||||||| ||| | ||| |||||||||||||||| |||||||
Sbjct 1200 TCTGGAAGAATCTTATGTGCAGGAGGTGCAC-GGAACCGGGGCAGCGGATATAAGAATGA 1258
Query 1291 ATATGTTTGATTACGGAAGAACAGAAGATAACTTCGGCCATggaaggggaagaggaggag 1350
|||||||||||||||||||| |||| |||||||| || |||||||| ||||||||||||
Sbjct 1259 ATATGTTTGATTACGGAAGACCAGATGATAACTTTGGTCATGGAAGAGGAAGAGGAGGAA 1318
Query 1351 gaagaggaaggggtagagggcgaggacatagacggggaagaggaCGTGTGTAGATTGTAA 1410
|| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1319 GAGGAGGAAGAGGTAGAGGGCGAGGGCATAGGCGGGGAAGAGGACGTGTGTAGATTGTAA 1378
Query 1411 TGAAATCATCCAGGCTTGTGGT 1432
||||||||||||||||||||||
Sbjct 1379 TGAAATCATCCAGGCTTGTGGT 1400
Score = 305 bits (165), Expect = 6e-82
Identities = 217/240 (90%), Gaps = 12/240 (5%)
Strand=Plus/Plus
Query 1549 GGTGTGGCAGCGCTGAATCTGTACATGTTTGTTTTAGGGTGATTCAGAATTTCAGATTTT 1608
||||||||||| |||| |||||||||| ||||||| || | | | | ||||||||||
Sbjct 1398 GGTGTGGCAGCTCTGATTCTGTACATG-GTGTTTTA-GG-G--T--G-A-TTCAGATTTT 1448
Query 1609 CGTGAGAGGTTTTGAATTTGAACATAAAGG--CTGCTAAGTCATTTATCTTTCTTTGTTG 1666
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
Sbjct 1449 CGTGAGAGGTTTTGAATTTGAACATAGAGGCTCTGCTAAGTCATTTATCTTTCTTTGTGG 1508
Query 1667 CTATAGTAATTCTTTGCGAAAAGATGTTGAAGTTCACCAGTAGCTTCCTCAACAACTCAT 1726
|||||||| | ||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 1509 CTATAGTAGTACTTTGCGAAAAGACGTTGAAGTTCACCAGTACCTTCCTCAACCACTCAT 1568
Query 1727 CTGAAGTGAGACACTCTTAAAATGAAGTTTACATTACAACAAAGTTATATCTAAAACACC 1786
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1569 CTGAAGTGAGACACTCTTAAA-TGAAGTTTACATTACAACAAAGTTCTATCTAAAACACC 1627
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67153101935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5