BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19950.1 Length=1789 Score E Sequences producing significant alignments: (Bits) Value Ahg488891 jgi|Araly1|488891|fgenesh2_kg.6__2025__AT5G19950.2 2109 0.0 > Ahg488891 jgi|Araly1|488891|fgenesh2_kg.6__2025__AT5G19950.2 Length=1627 Score = 2109 bits (1142), Expect = 0.0 Identities = 1317/1402 (94%), Gaps = 10/1402 (1%) Strand=Plus/Plus Query 39 CAATTGGTTTAGCGCGACAAGAGCATCAACGCAATGGTGGGAACATCAAGCTCCTCCGCC 98 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 1 CAATTGGTTTAGCGCGACAAGAGCATCGACGCAATGGAGGGAACATCAAGCTCCTCCGCC 60 Query 99 GGCGACCACACCCACACCGTCGTGATAAATGCCCTAACTAGTCGGGGCTGGTGCTTCAGA 158 | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 GCCGGCCACACCCACACCGTCGTGATAAATGCCCTAACTAGCCGGGGCTGGTGCTTCAGA 120 Query 159 GACGTCGAATACTTGAAATCCCTGGTCACTGAAATCTCTTCCTTGATCGGCGGCGGCAAT 218 |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| || ||| Sbjct 121 GACGTCGAATACTTGAAATCTCTGGTCACTGATATCTCCTCCTTGATCGGCGGTGGTAAT 180 Query 219 AAAACAGGCGCCATCGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 278 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAAACAGGCGCGGTTGTGGAGTCAGTGGAGGCGGAGCTGCTTAACATGGATATTAAGTTA 240 Query 279 ATCGGAGGTAAATCCCTCCCGGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 338 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATCGGAGGTAAGTCCCTCCCAGACCCGACCGAGTTACGCAGGTGTTCTCATCTTCAAGGC 300 Query 339 CCCAAAGTTCTCCAGATAAGTTATGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 398 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 301 CCCAAAGTTCTCCAGATAAGTTCTGTTAGGGATGTTACAAGAAGTAGCGCAGAGGAATTT 360 Query 399 GTGGGAAGTTCCACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGACGGGAAGACCGAA 458 |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 361 TTGGGAAGTTCTACTGGTAAACGAGTGCTAAAATTCGCTCTGACTGATGGCAAGACCGAG 420 Query 459 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTCACTCCTGGTACT 518 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 421 ATATCCGCGCTTGAGTACTCTCATATACCAACGATTAACAATGATGTAACCCCTGGTACT 480 Query 519 AAGGTACGTCTAGAAAATAAGGCTGTGATACGTGATGGTCTAGTATGTTTGACTCCAAAA 578 ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| Sbjct 481 AAGGTCCGTCTAGAAAATAAGGCTGTGATACGTGACGGTTTAGTATGTTTGACTCCGAAA 540 Query 579 GAGGTGACTGTCTTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 638 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GAGGTGACTGTATTGGGCGGTTATGTGCAATCACTCACTGAAGAATGGCAGATGAAGAAA 600 Query 639 AAATACGCTAGTTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGATGGCCCTCCTCCATTT 698 ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 601 AAATATGCTAATTTGGCTCGATCTCAGGAAAGCAAAGCTGGTGTTGGCCCTCCTCCATTT 660 Query 699 GAGGAGTTGAAGATTCGAACAGGTTCCCATCACCGCGATTACAACAAGACGACTTCTAGA 758 ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||| Sbjct 661 GAGGAGTTGCAGATTCGAACAGGTTCCCATCACCGGGATTACAACAGGACGACTTTTAGG 720 Query 759 AACAATGTACCTATTGCTGCAGAAAGCTCTGTAAAACATGCCGGTGGAGAAAAAGGTGAA 818 |||| |||||||| |||||||||||||| ||||||||| || |||| ||||| ||||||| Sbjct 721 AACATTGTACCTACTGCTGCAGAAAGCTATGTAAAACACGCTGGTGTAGAAAGAGGTGAA 780 Query 819 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAAATAAGAATATACAGAGGAATCCTGCA 878 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 781 AGTAGTGAAGTTGATGGGAACAAAAGAGGCACAGATAAGAATATACAGAGGAATCCTGCA 840 Query 879 GATTCTGATCCGAAAATATCTGTCGAAGTTGAAAATCAGGAAAAGCGAAGCAGTTCCGAT 938 ||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||| ||| Sbjct 841 GATTCTGATCCAAAAATATCTGTCAAAGTCGAAAATCAGGAAAAGCCAAGCAGTTCTGAT 900 Query 939 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 998 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 ACACGACCTAAACAAGTGGTGGAAGCTGTTCCTTTACAGAACCAAGCGGCTGCGCAGATA 960 Query 999 CTTCTTGAGAAGATGAAACATTCTAGTTCAAATGAT-AGGCAATACCaaggaagaagagg 1057 ||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||| Sbjct 961 CTTCTCGAGAAGATGAAACATTCAAGTTCAAATGACCAG-CAATACCAAGGAAGAAGAGG 1019 Query 1058 tag-gg--g---tagaggtagaggtagagggagggggagagaagaagaagaCTCTGCAGT 1111 ||| || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 TAGAGGTAGAGGTAGAGGTAGAGGTAGAGGGAGGGGGAGAGAAGAAGAAGACTCTGCAGT 1079 Query 1112 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGTgggggggCTCTTCCAACAGCTAA 1171 |||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| | Sbjct 1080 ATTTACACTAGATGAGTGGGAAAAGAGGAATACTGGCAGGGGAGTTCTTCCAACAGCTGA 1139 Query 1172 CCATCCAAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1231 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CAATCCGAGCGACACTACCCGCGATGAAGATCTTGCATGGCAGCTTCAGAATCAGTTTGA 1199 Query 1232 TCTGGAAGACTCTTATGGGCAGGAGATGC-CTGGAGCCGGGGCAGCGGATATCAGAATGA 1290 ||||||||| ||||||| ||||||| ||| | ||| |||||||||||||||| ||||||| Sbjct 1200 TCTGGAAGAATCTTATGTGCAGGAGGTGCAC-GGAACCGGGGCAGCGGATATAAGAATGA 1258 Query 1291 ATATGTTTGATTACGGAAGAACAGAAGATAACTTCGGCCATggaaggggaagaggaggag 1350 |||||||||||||||||||| |||| |||||||| || |||||||| |||||||||||| Sbjct 1259 ATATGTTTGATTACGGAAGACCAGATGATAACTTTGGTCATGGAAGAGGAAGAGGAGGAA 1318 Query 1351 gaagaggaaggggtagagggcgaggacatagacggggaagaggaCGTGTGTAGATTGTAA 1410 || ||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1319 GAGGAGGAAGAGGTAGAGGGCGAGGGCATAGGCGGGGAAGAGGACGTGTGTAGATTGTAA 1378 Query 1411 TGAAATCATCCAGGCTTGTGGT 1432 |||||||||||||||||||||| Sbjct 1379 TGAAATCATCCAGGCTTGTGGT 1400 Score = 305 bits (165), Expect = 6e-82 Identities = 217/240 (90%), Gaps = 12/240 (5%) Strand=Plus/Plus Query 1549 GGTGTGGCAGCGCTGAATCTGTACATGTTTGTTTTAGGGTGATTCAGAATTTCAGATTTT 1608 ||||||||||| |||| |||||||||| ||||||| || | | | | |||||||||| Sbjct 1398 GGTGTGGCAGCTCTGATTCTGTACATG-GTGTTTTA-GG-G--T--G-A-TTCAGATTTT 1448 Query 1609 CGTGAGAGGTTTTGAATTTGAACATAAAGG--CTGCTAAGTCATTTATCTTTCTTTGTTG 1666 |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | Sbjct 1449 CGTGAGAGGTTTTGAATTTGAACATAGAGGCTCTGCTAAGTCATTTATCTTTCTTTGTGG 1508 Query 1667 CTATAGTAATTCTTTGCGAAAAGATGTTGAAGTTCACCAGTAGCTTCCTCAACAACTCAT 1726 |||||||| | ||||||||||||| ||||||||||||||||| |||||||||| |||||| Sbjct 1509 CTATAGTAGTACTTTGCGAAAAGACGTTGAAGTTCACCAGTACCTTCCTCAACCACTCAT 1568 Query 1727 CTGAAGTGAGACACTCTTAAAATGAAGTTTACATTACAACAAAGTTATATCTAAAACACC 1786 ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 1569 CTGAAGTGAGACACTCTTAAA-TGAAGTTTACATTACAACAAAGTTCTATCTAAAACACC 1627 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67153101935 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5