BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19960.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488893 jgi|Araly1|488893|fgenesh2_kg.6__2027__AT5G19960.1 1847 0.0
> Ahg488893 jgi|Araly1|488893|fgenesh2_kg.6__2027__AT5G19960.1
Length=1252
Score = 1847 bits (1000), Expect = 0.0
Identities = 1167/1244 (94%), Gaps = 25/1244 (2%)
Strand=Plus/Plus
Query 67 TTCCTTGTTGAATTCCGACCAAAGTCGATAAAG-AGTTATGACGATGGACGATGGTAACT 125
||||||||||||||||||||||||| | | | ||||||||||| |||||||||||||
Sbjct 26 TTCCTTGTTGAATTCCGACCAAAGT-G-T---GTCGTTATGACGATTGACGATGGTAACT 80
Query 126 CCGTCTACGTCGGCGGCCTCCCTTACGACATCACCGAGGAGGCTGTCCGTCGCGTCTTCT 185
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 81 CCGTCTACGTCGGCGGCCTCCCTTACGACATCACCGAGGAGGCTGTCCGCCGTGTCTTCT 140
Query 186 CCATTTACGGCTCCGTCCTCACCGTTAAGATTGTCAATGACCGGAGTGTAAGAGGGAAAT 245
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 141 CCATTTACGGCTCCGTCCTCACCGTTAAGATTGTCAATGACCGAAGTGTAAGAGGGAAAT 200
Query 246 GCTATGGCTTTGTTACATTTTCGAACCGTCGATCGGCTGATGATGCTATCGAAGATATGG 305
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 201 GCTATGGCTTTGTTACGTTTTCAAACCGTCGATCGGCTGATGATGCTATCGAAGATATGG 260
Query 306 ATGGAAAAAGTATTGGTGGGCGTGCAGTGCGTGTGAATGATGTGACAACAAGAGGTGGAA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 ATGGAAAAAGTATTGGTGGGCGTGCAGTGCGTGTGAATGATGTGACAACAAGAGGTGGAA 320
Query 366 GAATGAATCCAGGTCCGGGGCGGTTACAACCACACGGTGGTTGGGATAGAAGTCCTGATA 425
|||||||||||||||| ||||||||||||||||||||||| |||| |||||| || ||||
Sbjct 321 GAATGAATCCAGGTCCCGGGCGGTTACAACCACACGGTGGATGGGGTAGAAGCCCCGATA 380
Query 426 GGAGAAGTGATGGTAATTATGAGAGGGATCGGTATAGTGATAGGTCTCGAGAACGGGATA 485
|||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 381 GGAGAAGTAATGGCAATTATGACAGGGATCGGTATAGTGATAGGTCCCGAGAACGGGATA 440
Query 486 GGTCTCAGGATAGGAGAAAAGATCATCGCTACATAGAGAAGGAAAGAGCTTATGAGCATT 545
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 441 GGTCTCAGGATAGGAGAAAAGATCATCGCTACACAGAGAAGGAAAGAGCTTATGAGCATT 500
Query 546 CACATGATTTTGAGAGGAGGAATGATCATGATATGGTAGATAGAAATGGTTATAAGGAAA 605
|||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct 501 CACATGATTTTGAGAGGAGGAATGATCATGATTTGCTAGATAGAAATGGTTACAAGGAAA 560
Query 606 GAGTTTTCGATGGTGATGAAGGAGATTGGCGTGGGGATAGGTCTTATGTGGATAATGGTA 665
|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 561 GAGTTTTCGAAGGTGATGAAGGAGATTGGCGTGGGGATAGGTCTTTTGGGGATAATGGTA 620
Query 666 GGGGAATAAATGGGACCAGTGCTCACGAAGGAAGGAGCCAAGAAACAAAGAGAGAAGATA 725
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 621 GGGGAATCAATGGGACCAGTGCTCACGAAGGAAGGAGCCAAGAAAGAAAGAGAGACGATA 680
Query 726 GTACCATTCTTGATGGTGGACGTGGCAGAGATCACTTCTCTAATTCAAGTGGAGATCATC 785
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 681 GTACCATTCTCGATGGTGGGCGTGGCAGAGATCACTTCTCTAATTCAAGTGGAGATCAAC 740
Query 786 AGGTGAAAGAAGATCTGGAAGCGCTGATTAAGATGCGTGAGGCGCTTCGAGATGAGGTGA 845
|||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 741 AGGTTAAAGAAGATCTAGAAGCGCTGATTAAGATGCGTGAGGCGCTTCAAGATGAGGTGG 800
Query 846 TGGTGATGGAAGAGAGACTGGAAGTA-AAAGAAGTAGTGTGCTCAGAGCTACAGAAGAAA 904
||||||||||||||||| |||| | | |||||||||||||||||||||||||| || |||
Sbjct 801 TGGTGATGGAAGAGAGATTGGATG-AGAAAGAAGTAGTGTGCTCAGAGCTACAAAA-AAA 858
Query 905 -TCTAAGAGATTAGAAGATTTGTTGATCAATGAAAAGAAACTGGTTTCACAACGCCGAAA 963
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 859 GTCTAAGAGATTAGAAGATTTGTTGATCAATGAAAAGAAATTGGTTGCACAACGCCGAAA 918
Query 964 AGAATTGGCAAAGCTACATAAATCATATTCAAGGGTTAGAGAGTGCACGGACAACCTGAA 1023
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 919 AGAATTGGCAAAGCTACATAAATCATTTTCAAGGGTTAGAGAGTGCACGGACAACCTGAA 978
Query 1024 AGACTGTGAACAAGAACTCCAGTTGCTTGTTAATTCAGCAGCTAGAGAAGGCGTGGCAGG 1083
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 979 AGACTGTGAACAAGAACTCCAGTCGCTTGTTAATTCAGCAGCTAGAGAAGGCGTGGCAGG 1038
Query 1084 TGCTGATGAAGGATTGGGACACGGGTATCCGTAACACGGTCACCCGCATGTATGATCTGT 1143
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1039 TGCTGATGAAGGACTGGGACACGGGTATGCGTAACACGGTCACCCGCATTTATGATCTGT 1098
Query 1144 TTTGTCTAAAGTGTAGCTTTGATATGTCTTCTCTTTGTGACTTTC-C-GAGttttttt-C 1200
| |||||||||||||||||||||||| | |||||||||||||| | | |||||||||| |
Sbjct 1099 TCTGTCTAAAGTGTAGCTTTGATATGCCGTCTCTTTGTGACTT-CACTGAGTTTTTTTTC 1157
Query 1201 TAGTCGAGCTACACTAATTTGGTACATATTTACTT--GTTTTGGCAAGTATGTATTCATT 1258
||||||||||||| |||||||||||||| | ||| ||||| |||| ||||||||||||
Sbjct 1158 AAGTCGAGCTACACGAATTTGGTACATATCTGCTTATGTTTTAGCAAATATGTATTCATT 1217
Query 1259 TCATTCGGGATGTATTATTATCATACGAACATGAACTAAATAAT 1302
|| | | |||||||||||||||||||||||||||||||
Sbjct 1218 --AT--G---T--ATTATTATCATACGAACATGAACTAAATAAT 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5