BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19970.1
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941548 jgi|Araly1|941548|scaffold_602092.1 1742 0.0
> Ahg941548 jgi|Araly1|941548|scaffold_602092.1
Length=1141
Score = 1742 bits (943), Expect = 0.0
Identities = 1047/1097 (95%), Gaps = 7/1097 (1%)
Strand=Plus/Plus
Query 1 ATGAAACTACTCAATAAGTATGTTTTGACCACAATCTCTGACCGGAGTTTCATCCGACAA 60
|||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 22 ATGAAACTACTCAATAAGTACGTTTTAACAACTATCTCTGACCGGAGTTTCATCCGACAG 81
Query 61 CTCAACGATGGATCACAGAGAGACACGTGGATTTTCGTCTACACGAGGCGTTGGCGCCGT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 82 CTCAACGATGGATCACAGAGAGACACGTGGATTTTCGTCTACACCAGGCGTTGGCGCCGT 141
Query 121 GACAACGGTGTGCTTCACGGTTTCTCGGACCGATCCGTACGTTGGTTCAAGATTCCGGTG 180
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 142 GACAACGGTGTGCTTCACGGATTCTCGGACCGATCCGTACGGTGGTTCAAGATTCCGGTG 201
Query 181 GCTGAAATACTCGCCGGGGAGATTCGTCCCGGCGAAGATTTGTATTTACTAACTGCTAGT 240
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 202 GCTGAAATTCTCGCCGGGGAGATTCGTCCCGGCGAAGATTTATATTTACTAACAGCTAGC 261
Query 241 GGTAATTTCCTTCTCTTTGCTTCTAATACTCATAGTGGAATCATAGCCGTTGATTTGGTG 300
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 262 GGTAACTTCCTTCTATTTGCCTCTAATACTCATAGTGGAATCATAGCCGTTGATTTGGTG 321
Query 301 GGCAAGATCGTTACAAGAATCAGCTCATGTCCGTTAGGTCCACGTGGAACTTCGTCTTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 GGCAAGATCGTTACAAGAATCAGCTCATGTCCGTTAGGTCCACGTGGAACTTCGTCTTGG 381
Query 361 AGACGATCCGGTATGAAGCTTGTGCCTGATCCATCAAATCCTAGTCATTTCCGGTTTATG 420
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 382 AGACGATCCGGTATGAAGCTAGTGCCTGATCCATCAAGTCCTAGTCATTTCCGGTTTATG 441
Query 421 TTCGCTGAGATGGTCAATAACCGACCGGTTCTGTTTACTTATTATTCTAACACAGCCACG 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 442 TTCGCTGAGATGGTCAATAACCGACCGGTTCTGTTTACTTATCATTCTAACACAGCCACG 501
Query 481 TGGCATACTAAAGAAACAGAGGATACAACAAATTGGGAGGT-TAAGAAAAACAGTAATGT 539
||||||||||||||| ||||||||||||||||||||| | |||| |||| || |||||
Sbjct 502 TGGCATACTAAAGAAGCAGAGGATACAACAAATTGGG-TTTATAAGGAAAATAGCAATGT 560
Query 540 ATTATTCTTAAGCTTATCAAATCGACCTCACGAGAGTACTGTGATGAGCGTTGAC---GA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 561 ATTATTCTTAAGCTTATCAAATCGACCTCACGAGAGTACTGTGATGAGCGTTGACGATGA 620
Query 597 TGGTTCGATAATAAACCGGTTTCCGAG-GATTTTGCGGCCGAGGATAAACCAAGACGCGA 655
||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 621 TGGTTCGATGATAAACCGGTTTCCG-GCGATTTTGCGGCCGAGGATAAACCAAGACGCGA 679
Query 656 TCAGACAATGCCCGTCGAGTGTTGGATTCAGTAGGAACGATCTAGAGAGTCAGTTGTTAC 715
|||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 680 TCAGACAATGCCCGTCGAGTGTCGGATTCAGCAGGAACGATCTAGAGAGTCAATTGTTGC 739
Query 716 ATATACATGGAGATGAGTACAAAGTGGTTATTAGATTAGACAGAATTGATAATTCAAAGA 775
|||||||||||||||| || |||||||| ||||| ||||||| | | |||||||||||||
Sbjct 740 ATATACATGGAGATGAATATAAAGTGGTGATTAGGTTAGACACAGTAGATAATTCAAAGA 799
Query 776 TGAATAAAGTGATGAAGAGTTTAGAGGTTTGGGAAATAAGCTCAAATGGTGAGAAATGGG 835
|||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TGAAGAAAATGATGAAGAGGTTAGAGGTTTGGGAAATAAGCTCAAATGGTGAGAAATGGG 859
Query 836 AGTTAGTGTCAAGAGCACCAAGTGAAGTGATCAGCAAGAAGCCTTGTGGTGTGATGATGG 895
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 860 AGTTAGTGTCAAGAGCACCAAGTGAAGTGATCAGCAAAAAGCCTTGTGGTGTGATGATGG 919
Query 896 GATGCTTAGAGAGGAGATTAGGGGTGATTAGAGTGGCTCTAATGACGAATCATGAAGGTC 955
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 GATGCTTAGAGAGGAGATTAGGGGTGATTAGAGTGGCTCTAATGACGAATCATGAAGGTT 979
Query 956 TATGGAATATAATTTGGTTGGATTATGACAAGCATAAGGATAAGTGGGAGTGGGTTCCAC 1015
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 980 TATGGAATATAATTTGGTTAGATTATGACAAGCAGAAGGATAAGTGGGAGTGGGTTCCAC 1039
Query 1016 TACCTGATTGTAGATTCTTGCAAGGCTCAAATATGGCCGGGATTAGTTTCTCCTCTGGCC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 TACCTGATTGTAGATTCTTGCAAGGCTCAAATATGGCCGGGATTAGTTTCTCCTCTGGCC 1099
Query 1076 TCACCTTCTCTTTGTAA 1092
|||||||||||||||||
Sbjct 1100 TCACCTTCTCTTTGTAA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40677152439
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5