BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19980.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488895 jgi|Araly1|488895|fgenesh2_kg.6__2029__AT5G19980.1 1674 0.0
> Ahg488895 jgi|Araly1|488895|fgenesh2_kg.6__2029__AT5G19980.1
Length=1199
Score = 1674 bits (906), Expect = 0.0
Identities = 1040/1104 (94%), Gaps = 12/1104 (1%)
Strand=Plus/Plus
Query 134 AAACAATGTCGTCCTCTCGATTCGATTCAAACAAACAATTAACAACAAGCAGTCTCGTAA 193
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 103 AAACAATGTCGTCCTCTCGATTCGATTCAAGCAAACAATTAACAACAAGCAGTCTCGTAA 162
Query 194 TCGGCTACGCACTCTGCTCAAGCCTCCTCGCCGTAATCAACAAATTAGCAATCACATACT 253
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 163 TCGGGTACGCACTCTGCTCAAGCCTCCTCGCCGTCATCAACAAATTAGCAATCACATACT 222
Query 254 TCAACTACCCAGGTCTCCTCACAGCTCTTCAATACCTAACCTGCACCGTCGCCGTCTATC 313
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 223 TCAACTACCCAGGCCTTCTCACAGCTCTCCAATACCTAACCTGCACCGTCGCCGTCTGGC 282
Query 314 TTCTCGGCAAATCAGGG-TTAATCAATCACGATCCATTCACATGGGACACTGCTAAGAAA 372
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 283 TTCTCGGCAAATCAGGGCTT-ATCAATCACGATCCATTCACATGGGACACAGCTAAGAAA 341
Query 373 TTTCTCCCTGCAGCTATCGTCTTCTACCTCGCTATCTTCACAAACACAAACCTCCTCCGT 432
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 342 TTCCTCCCTGCAGCTATCGTCTTCTACCTCGCCATCTTCACAAACACAAACCTCCTCCGT 401
Query 433 CACGCTAATGTCGATACTTTCATCGTCTTCCGATCTCTAACACCGCTCTTAGTCGCGATC 492
||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 402 CACGCTAATGTCGATACTTTCATTGTCTTCCGATCTCTCACGCCGCTCTTAGTCGCGATC 461
Query 493 GCTGATACTGTGTTTCGTAGTCAGCCTTTACCTTCGAGACTTACGTTTTTGT-CTCTCGT 551
||||| ||||||||||||||||||||||||||||| || ||||||||||||| || | |
Sbjct 462 GCTGACACTGTGTTTCGTAGTCAGCCTTTACCTTCAAGGCTTACGTTTTTGTCCT-TATT 520
Query 552 CGTTATCCTCGCTGGAGCTGTTGGGTATGTTGCAACTGACTCGTCTTTTACTCTAACGGC 611
||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 521 CGTCATCCTCGCTGGTGCTGTTGGGTATGTTGCAACTGACTCGTCTTTTACTCTCACGGC 580
Query 612 TTATTCATGGGCTTTGGCTTATCTTGTTACCATTACTACTGAAATGGTTTACATTAAGCA 671
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TTATTCCTGGGCTTTGGCTTATCTTGTTACCATTACTACTGAAATGGTTTACATTAAGCA 640
Query 672 TATGGTCTCTAA-TATTAAATTGAACATTTGGGGATTGGTTCTCTACAATAATCTAC-TG 729
|||||| || || |||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 641 TATGGTGTC-AAGTATTAAATTGAACATTTGGGGATTGGTTCTCTACAATAATCT-CTTG 698
Query 730 TCTCTGATGATAGCACCGGTGTTCTGGTTTCTTACTGGAGAATTCACCGAGGTTTTCGCG 789
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 699 TCTCTGATGATAGCACCGATATTCTGGTTTCTTACTGGAGAATACACCGAGGTTTTCGCT 758
Query 790 GCGTTGAGTGAGAATAGAGGGAATTTGTTTGAGCCTTATGCGTTTTCTTCTGTGGCTGCG 849
|||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 759 GCGTTGGGTGAGAATCGAGGGAATTTGTTTGAACCTTATGCGTTTTCCGCTGTGGCTGCG 818
Query 850 TCGTGTGTGTTTGGTTTCCTTATCAGTTACTTTGGATTTGCTGCTAGGAATGCTATCTCT 909
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 819 TCGTGTGTGTTTGGTTTCCTTATCAGCTACTTTGGATTTGCTGCTAGGAATGCTATCTCT 878
Query 910 GCTACTGCTTTTACAGTCACTGGTGTTGTTAACAAGTTCTTGACTGTTGTCATCAATGTT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GCTACTGCTTTTACAGTCACTGGTGTTGTTAACAAGTTCTTGACTGTTGTCATCAATGTT 938
Query 970 TTGATTTGGGATAAGCATGCCACTCCTGTTGGTTTGGTTTGTCTTCTTTTTACTATCTGT 1029
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 939 TTGATTTGGGATAAGCATGCCACTCCTGTTGGTTTGGTTTGTCTACTGTTTACTATCTGT 998
Query 1030 GGAGGTGTTGGTTATCAGCAGAGTGTCAAATTGGATAAACCCATTGAGAAGGTCAGCGAG 1089
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 999 GGAGGTGTTGGTTATCAGCAGTCTGTCAAATTGGATAAACCCATCGAGAAGGTCAGCGAG 1058
Query 1090 AAAGATAGCGAGAAGGGAGAGGAAGATGAGGAGTTGACGCAGTTGGTTCCGGGGAAACTA 1149
||||| ||||||||||| ||||||||||| |||||| ||| |||| | | || ||||||
Sbjct 1059 AAAGACAGCGAGAAGGGCGAGGAAGATGAAGAGTTGTCGCCGTTGAATACAGGAAAACTA 1118
Query 1150 GCTTCTGTTGTATGAGAG-AAGTGTCATTGTTTTGCAGCCTGCCTTTTCAGGTGTGTAAC 1208
||||||||||||| |||| ||||||||||||||||||||||| ||| |||||||||| |
Sbjct 1119 GCTTCTGTTGTATAAGAGCAAGTGTCATTGTTTTGCAGCCTG--TTT-CAGGTGTGTAGC 1175
Query 1209 CTTTTGAATATCTTAGCCTTTTTT 1232
|||||||||||||||||||||||
Sbjct 1176 ATTTTGAATATCTTAGCCTTTTTT 1199
Score = 154 bits (83), Expect = 2e-36
Identities = 100/107 (93%), Gaps = 5/107 (5%)
Strand=Plus/Plus
Query 1 GTACGATAAGACACTGACGAGAGAAGTCGTCGCCTTCCTCTAATTAGTCTCTGAATAATC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTACGATAAGACACTGATGAGAGAAGTCGTCGCCTTCCTCTAATTAGTCTCTGAAT---C 57
Query 61 CGATCCAGATCCCAAATCCTCTCTTCTTCATCTTCACCGATCTGGAT 107
|||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 58 CGATCCAGATCCCAAATCCTCT-T-CTTCATCTTCTCCGATCTGGAT 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5