BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19990.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941550 jgi|Araly1|941550|scaffold_602094.1 2080 0.0
Ahg488897 jgi|Araly1|488897|fgenesh2_kg.6__2031__AT5G20000.1 1995 0.0
Ahg922030 jgi|Araly1|922030|scaffold_103311.1 339 5e-92
Ahg932569 jgi|Araly1|932569|scaffold_400557.1 250 2e-65
> Ahg941550 jgi|Araly1|941550|scaffold_602094.1
Length=1304
Score = 2080 bits (1126), Expect = 0.0
Identities = 1237/1291 (96%), Gaps = 6/1291 (0%)
Strand=Plus/Plus
Query 118 TTTGTTTCAATCACTGAGAAAATGGCGGCCGTAGGAGTAGATTCGAGGCGTCCTGAGACA 177
|||| | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1 TTTGCTGCAATCACTGAGAAAATGGCAGCCGTAGGAGTTGATTCGAGGCGTCCTGAGACA 60
Query 178 GCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 120
Query 238 CAGTACTATCTCCAGCACATCCATGAGCTCCAGCGCCAGCTTCGACAGAAGACTAATAAC 297
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 121 CAGTACTATCTCCAGCACATCCATGAGCTCCAGCGCCAGCTCCGCCAGAAGACTAATAAC 180
Query 298 CTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCTC-GAGTGAGAATGCTCAGAGA 356
|||||||||||||||||||| ||||| ||||||||||| | |||| ||||||||||||||
Sbjct 181 CTCAATCGCCTTGAAGCTCAGAGGAACGAACTCAATTC-CAGAGTAAGAATGCTCAGAGA 239
Query 357 AGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGAGAAGTGGTAAAAGTTATGGG 416
|||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 240 AGAGTTGCAGCTGCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGGG 299
Query 417 AAAGAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTTGATATTGACAA 476
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 300 AAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGAAAGTATGTTGTTGATATTGACAA 359
Query 477 AAGTATAGACATTACGAAAATCACTCCATCAACGAGAGTTGCTCTTCGTAATGATAGCTA 536
||||||||| || || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AAGTATAGATATAACAAAAATCACTCCATCCACGAGAGTTGCTCTTCGTAATGATAGCTA 419
Query 537 TGTTCTCCACCTGGTTC-TGCCAAGTAAAGTAGATCC-CTTGGTTAACCTTATGAAAGTT 594
|||||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||
Sbjct 420 TGTTCTCCACCTGG-TCTTGCCAAGTAAAGTAGATCCGC-TGGTTAACCTTATGAAAGTT 477
Query 595 GAGAAGGTTCCAGACTCCACCTATGACATGATTGGTGGTCTTGACCAGCAGATTAAGGAA 654
|| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 478 GAAAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATTAAGGAA 537
Query 655 ATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATT 597
Query 715 GCGCAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAACTGGGAAGACACTATTGGCT 774
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 598 GCGCAGCCAAAGGGTGTGTTGTTATATGGTCCACCTGGAACTGGGAAGACACTTTTGGCT 657
Query 775 CGGGCTGTTGCACATCACACTGACTGTACTTTCATAAGAGTTTCTGGTTCCGAGCTTGTC 834
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 658 CGGGCTGTTGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCAGAGCTGGTC 717
Query 835 CAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGGGAG 894
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 CAGAAATACATTGGAGAAGGTTCTAGGATGGTCAGAGAACTTTTTGTGATGGCAAGGGAG 777
Query 895 CATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATGGAA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATGGAA 837
Query 955 TCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGGACCATGCTCGAGCTTCTCAATCAA 1014
||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct 838 TCTGGAAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAATCAA 897
Query 1015 CTTGACGGTTTTGAAGCGTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATTGAT 1074
||||| || || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 CTTGATGGATTCGAAGCGTCAAACAAAATCAAGGTTTTGATGGCAACAAATCGTATTGAT 957
Query 1075 ATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAAT 1134
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 958 ATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGGATTGATAGGAAAATTGAATTCCCTAAT 1017
Query 1135 CCTAATGAAGAGTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATG 1194
||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 1018 CCTAATGAAGAGTCACGTTTTGATATCTTAAAGATACACTCAAGGAAAATGAATTTGATG 1077
Query 1195 CGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGCGCTTCAGGTGCTGAGCTG 1254
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 CGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAGCTG 1137
Query 1255 AAGGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGAGAGGAGAGTACACGTGACA 1314
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1138 AAGGCTGTGTGCACGGAGGCGGGAATGTTTGCGCTGCGGGAGAGGAGAGTTCACGTGACA 1197
Query 1315 CAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAGACACGGAGAAGAACATG 1374
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1198 CAAGAAGACTTTGAGATGGCGGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAACATG 1257
Query 1375 TCTCTGCGTAAGCTGTGGAAGTAGGAATCTC 1405
|||||||||||||| ||||||||||||||||
Sbjct 1258 TCTCTGCGTAAGCTCTGGAAGTAGGAATCTC 1288
> Ahg488897 jgi|Araly1|488897|fgenesh2_kg.6__2031__AT5G20000.1
Length=1680
Score = 1995 bits (1080), Expect = 0.0
Identities = 1234/1310 (94%), Gaps = 3/1310 (0%)
Strand=Plus/Plus
Query 97 AGAGATCTCTGTCTTCGATAATTTGTTTCAATCACTGAGAAAATGGCGGCCGTAGGAGTA 156
||||| ||||| |||||||||||| | ||||||| | | ||||||||||||||||||
Sbjct 211 AGAGAGATCTGT-TTCGATAATTTGCTGCAATCACCGTGTTAATGGCGGCCGTAGGAGTG 269
Query 157 GATTCGAGGCGTCCTGAGACAGCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCG 216
|| |||||| ||||| |||| |||||||||||||||| ||||| || ||||||||||||
Sbjct 270 GAGACGAGGCCTCCTGTGACAACGATGGAGGAAACCTGCAACGTCAAGGGAGCGGCGGCG 329
Query 217 AAACAAGGGGAAGGGCTTAAGCAGTACTATCTCCAGCACATCCATGAGCTCCAGCGCCAG 276
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 330 AAACAAGGGGAAGGGCTTAAGCAGTACTATCTCCAGCATATCCATGAGCTCCAGCGTCTG 389
Query 277 CTTCGACAGAAGACTAATAACCTCAATCGCCTTGAAGCTCAAAGGAATGAACTCAATTCT 336
|| ||||| ||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 390 CTCCGACAAAAGACGAACAACCTTAATCGCCTTGAAGCTCAGAGGAATGAACTCAATTCT 449
Query 337 CGAGTGA-GAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGG 395
|||| | ||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 450 AGAGT-ACGAATGCTCAGAGAAGAGTTGCAACTGCTTCAAGAACCTGGGTCCTATGTGGG 508
Query 396 AGAAGTGGTAAAAGTTATGGGAAAGAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAA 455
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 509 CGAAGTGGTAAAAGTGATGGGAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAA 568
Query 456 GTATGTTGTTGATATTGACAAAAGTATAGACATTACGAAAATCACTCCATCAACGAGAGT 515
|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 569 ATATGTTGTCGATATTGACAAAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGT 628
Query 516 TGCTCTTCGTAATGATAGCTATGTTCTCCACCTGGTTCTGCCAAGTAAAGTAGATCCCTT 575
|||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 629 TGCTCTCCGTAATGATAGTTATGTTCTCCACCTGGTTCTGCCAAGTAAGGTTGATCCCTT 688
Query 576 GGTTAACCTTATGAAAGTTGAGAAGGTTCCAGACTCCACCTATGACATGATTGGTGGTCT 635
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 689 GGTTAACCTTATGAAAGTTGAGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCT 748
Query 636 TGACCAGCAGATTAAGGAAATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATT 695
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TGACCAGCAAATCAAGGAAATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATT 808
Query 696 GTTTGAGTCTCTTGGAATTGCGCAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAAC 755
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 809 GTTTGAGTCTCTTGGAATTGCACAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAAC 868
Query 756 TGGGAAGACACTATTGGCTCGGGCTGTTGCACATCACACTGACTGTACTTTCATAAGAGT 815
||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 869 TGGGAAGACACTACTGGCTCGGGCTGTGGCACATCACACAGACTGTACTTTCATCAGAGT 928
Query 816 TTCTGGTTCCGAGCTTGTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACT 875
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TTCTGGATCCGAGCTGGTACAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACT 988
Query 876 TTTTGTGATGGCAAGGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTAT 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 TTTTGTGATGGCAAGGGAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTAT 1048
Query 936 TGGGTCTGCTCGTATGGAATCTGGAAGTGGAAATGGTGACAGTGAGGTGCAACGGACCAT 995
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 1049 CGGGTCTGCTCGTATGGAATCTGGAAGTGGAAATGGTGACAGTGAGGTTCAAAGGACTAT 1108
Query 996 GCTCGAGCTTCTCAATCAACTTGACGGTTTTGAAGCGTCAAACAAAATCAAGGTTTTGAT 1055
||| ||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 1109 GCTTGAGCTTCTCAATCAACTTGACGGATTCGAAGCGTCAAACAAAATCAAGGTTCTGAT 1168
Query 1056 GGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAG 1115
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1169 GGCGACAAATCGTATTGATATTCTGGATCAAGCTCTTCTTAGGCCTGGAAGGATTGATAG 1228
Query 1116 GAAAATTGAATTTCCTAATCCTAATGAAGAGTCACGTTTTGACATCTTGAAGATTCACTC 1175
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1229 GAAAATTGAATTCCCTAATCCTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTC 1288
Query 1176 GAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGG 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1289 GAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGG 1348
Query 1236 CGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGA 1295
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1349 TGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGCATGTTTGCGCTGCGGGA 1408
Query 1296 GAGGAGAGTACACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAA 1355
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 GAGGAGAGTTCACGTGACACAAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAA 1468
Query 1356 AGACACGGAGAAGAACATGTCTCTGCGTAAGCTGTGGAAGTAGGAATCTC 1405
|||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1469 AGACACAGAGAAGAACATGTCTCTGCGTAAGCTCTGGAAGTAGGAATCTC 1518
> Ahg922030 jgi|Araly1|922030|scaffold_103311.1
Length=290
Score = 339 bits (183), Expect = 5e-92
Identities = 205/216 (95%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 339 AGTGAGAATGCTCAGAGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGAGA 398
||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||
Sbjct 18 AGTAAGAATGCTCAGAGAAGAGTTGCAGCTGCTTCAAGAACCTGGGTTCTATGTGGGCGA 77
Query 399 AGTGGTAAAAGTTATGGGAAAGAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTA 458
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 78 AGTGGTAAAAGTGATGGGAAAGAACAAGGTCTTGGTTAAGGTTTATCCAGAGGGGAAGTA 137
Query 459 TGTTGTTGATATTGACAAAAGTATAGACATTACGAAAATCACTCCATCAACGAGAGTTGC 518
||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct 138 TGTTGTTGATATTGACAAAAGTATATACATAACGAAAATCACTTCATCAACGAGAGTTGC 197
Query 519 TCTTCGTAATGATAGCTATGTTCTCCACCTGGTTCT 554
||||||||||||||| ||||||||||||||||||||
Sbjct 198 TCTTCGTAATGATAGTTATGTTCTCCACCTGGTTCT 233
> Ahg932569 jgi|Araly1|932569|scaffold_400557.1
Length=294
Score = 250 bits (135), Expect = 2e-65
Identities = 167/181 (92%), Gaps = 7/181 (4%)
Strand=Plus/Plus
Query 1176 GAGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGG 1235
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 114 GAGGAAAATGAATTTGATGCGTGGGATCGATCTGAAAAATATTGCAGAGAAGATGAATGG 173
Query 1236 CGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCTCTGCGTGA 1295
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 174 TGCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCACTGCGGGA 233
Query 1296 GAGGAGAGTACACGTGAC-----ACA-AG-AAGACTTTGAGATGGCGGTGGCCAAGGTAA 1348
||||||||| |||||||| ||| || |||||||||||||||||||||| |||||||
Sbjct 234 GAGGAGAGTTCACGTGACCGGTGACACAGGAAGACTTTGAGATGGCGGTGGCGAAGGTAA 293
Query 1349 T 1349
|
Sbjct 294 T 294
Score = 145 bits (78), Expect = 1e-33
Identities = 95/103 (92%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 1046 AGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAA 1105
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 14 AGGTTTTGATGGCGACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTCGAA 73
Query 1106 GAATTGATAGGAAA-A-TTGAATTTCCTAATCCTAATGAAGAG 1146
| |||||||| ||| | ||||||||| ||||| ||||||||||
Sbjct 74 GGATTGATAGAAAACAATTGAATTTCATAATCTTAATGAAGAG 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5