BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20000.1
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488897 jgi|Araly1|488897|fgenesh2_kg.6__2031__AT5G20000.1 2427 0.0
Ahg941550 jgi|Araly1|941550|scaffold_602094.1 1953 0.0
Ahg932569 jgi|Araly1|932569|scaffold_400557.1 237 2e-61
> Ahg488897 jgi|Araly1|488897|fgenesh2_kg.6__2031__AT5G20000.1
Length=1680
Score = 2427 bits (1314), Expect = 0.0
Identities = 1579/1701 (93%), Gaps = 41/1701 (2%)
Strand=Plus/Plus
Query 35 ATAACAAAACCAAGCGGTTTAT--AGACTCGGTTTATTTTGGGTCG-TTC-GTT-TTCCA 89
||||||||||||| ||| | || | | |||||| ||||||||||| ||| ||| ||
Sbjct 1 ATAACAAAACCAAACGGCTGATGAATATTCGGTTAATTTTGGGTCGTTTCGGTTATT--T 58
Query 90 TTTTATT-C-TCACAA-AATAAAAAATAGTAAATTGAACTTACaaaaaaaaaaaaGATGT 146
|||| || | ||| || || | ||||| |||||||||||| |||||||||||||||
Sbjct 59 TTTTTTTCCGTCA-AAGAA-ATAAAAT--TAAATTGAACTT----AAAAAAAAAAGATGT 110
Query 147 CTTGTTGGATAATCCAAGGTTCTTTTCTATATA--AAGG-TTCTTTGCTCATGATCTTAG 203
||||||||||||||||||||||| ||||||||| | || || |||| | |||||||| |
Sbjct 111 CTTGTTGGATAATCCAAGGTTCTGTTCTATATAGTAGGGTTTATTTGGTAATGATCTTGG 170
Query 204 TCCCTGTGATCTATCTTTGAATCTCAAAAGCATACT--TGAGAGAGATCTGTTTCGATAA 261
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 171 TCTCTGTGATCTATCTTTGAATCTCAAAAGCATACTAGAGAGAGAGATCTGTTTCGATAA 230
Query 262 TTTGCTTCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACA 321
|||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 231 TTTGCTGCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGACGAGGCCTCCTGTGACA 290
Query 322 GCGATGGAGGAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAA- 380
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 291 ACGATGGAGGAAACCTGCAACGTCAAGGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 350
Query 381 CAAGTACTACCTCCAGCATCTCGATGAGCTCCAGCGCCTGCAACG-CGAAAAGTCGTATA 439
| ||||||| ||||||||| || ||||||||||||| |||| || | ||||| || | |
Sbjct 351 C-AGTACTATCTCCAGCATATCCATGAGCTCCAGCGTCTGCTCCGAC-AAAAGACGAACA 408
Query 440 ACCTTAATCGTCTTGAAGCTCAGAGGAATGAACTCAATTCTCGAGTACGAATGCTCAGAG 499
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 409 ACCTTAATCGCCTTGAAGCTCAGAGGAATGAACTCAATTCTAGAGTACGAATGCTCAGAG 468
Query 500 AAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGATGG 559
||||||| || || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 AAGAGTTGCAACTGCTTCAAGAACCTGGGTCCTATGTGGGCGAAGTGGTAAAAGTGATGG 528
Query 560 GAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGACA 619
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 529 GAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAATATGTTGTCGATATTGACA 588
Query 620 AAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGCT 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 589 AAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAGTT 648
Query 680 ATGTTCTCCACCTGGTTCTGCCAAGTAAAGTAGATCCCTTGGTTAACCTTATGAAAGTTG 739
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 649 ATGTTCTCCACCTGGTTCTGCCAAGTAAGGTTGATCCCTTGGTTAACCTTATGAAAGTTG 708
Query 740 AGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 AGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAGGAAA 768
Query 800 TAAAGGAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTG 859
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGAATTG 828
Query 860 CGCAGCCAAAGGGTGTGTTGTTGTACGGTCCACCTGGAACTGGGAAGACACTATTGGCTC 919
| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 829 CACAGCCAAAGGGTGTGTTGTTATACGGTCCACCTGGAACTGGGAAGACACTACTGGCTC 888
Query 920 GGGCTGTGGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTGGTCC 979
||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 889 GGGCTGTGGCACATCACACAGACTGTACTTTCATCAGAGTTTCTGGATCCGAGCTGGTAC 948
Query 980 AGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGGGAGC 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGGGAGC 1008
Query 1040 ATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATGGAAT 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 ATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATGGAAT 1068
Query 1100 CTGGTAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAATCAAC 1159
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1069 CTGGAAGTGGAAATGGTGACAGTGAGGTTCAAAGGACTATGCTTGAGCTTCTCAATCAAC 1128
Query 1160 TTGACGGATTCGAGGCGTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATTGATA 1219
||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1129 TTGACGGATTCGAAGCGTCAAACAAAATCAAGGTTCTGATGGCGACAAATCGTATTGATA 1188
Query 1220 TTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATTGATAGGAAAATTGAATTTCCTAATC 1279
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1189 TTCTGGATCAAGCTCTTCTTAGGCCTGGAAGGATTGATAGGAAAATTGAATTCCCTAATC 1248
Query 1280 CTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTCAAGGAAAATGAATTTGATGC 1339
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1249 CTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTCGAGGAAAATGAATTTGATGC 1308
Query 1340 GTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAGCTGA 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 GTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAGCTGA 1368
Query 1400 AGGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAGAGGAGAGTACATGTGACTC 1459
||||||| ||||||||||||||||||||||| || || ||||||||||| || ||||| |
Sbjct 1369 AGGCTGTGTGCACGGAGGCGGGCATGTTTGCGCTGCGGGAGAGGAGAGTTCACGTGACAC 1428
Query 1460 AGGAAGACTTTGAGATGGCTGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAACATGT 1519
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1429 AAGAAGACTTTGAGATGGCGGTGGCCAAGGTAATGAAGAAAGACACAGAGAAGAACATGT 1488
Query 1520 CTCTGCGTAAGCTCTGGAAGTAGGAATTTCAGAGTCACAG-ATT-AATTTCGATT-A--T 1574
||||||||||||||||||||||||||| |||||| || || ||| |||| | ||| | |
Sbjct 1489 CTCTGCGTAAGCTCTGGAAGTAGGAATCTCAGAG-CAAAGGATTGAATT-C-ATTTAGGT 1545
Query 1575 TTCTTCTCTACTGTCTGTGGTTCTTTCTGAAACCTTTTCGGCTAGCGCTTTAAGCTTTTC 1634
||| | | ||||||||||||||||||||||||||||||||| | |||||||||||| |||
Sbjct 1546 TTCCT-T-TACTGTCTGTGGTTCTTTCTGAAACCTTTTCGGTTGGCGCTTTAAGCTCTTC 1603
Query 1635 TAAACAATGTTTGTACACTAGTTTCTATTCATTCAAATGGTTGTTCAGCATAACATCTTC 1694
|||||| |||||||||||||||| || ||||||||||| ||||||||||||| ||||
Sbjct 1604 GAAACAAAGTTTGTACACTAGTTT--AT--ATTCAAATGGTGGTTCAGCATAACAGCTTC 1659
Query 1695 GATTCAACCAAGCTTACATTT 1715
||| ||||||||||||||||
Sbjct 1660 CATTTAACCAAGCTTACATTT 1680
> Ahg941550 jgi|Araly1|941550|scaffold_602094.1
Length=1304
Score = 1953 bits (1057), Expect = 0.0
Identities = 1215/1291 (94%), Gaps = 12/1291 (1%)
Strand=Plus/Plus
Query 262 TTTGCTTCAATCACCGTGTTAATGGCGGCCGTAGGAGTGGAGGCGAGACCTCCTGTGACA 321
|||||| ||||||| | | |||||| ||||||||||| || |||| | ||||| ||||
Sbjct 1 TTTGCTGCAATCACTGAGAAAATGGCAGCCGTAGGAGTTGATTCGAGGCGTCCTGAGACA 60
Query 322 GCGATGGAGGAAACCTGCAACGTTAAGGGAGCGGCGGCGAAACAAGGAGAAGGGCTTAA- 380
||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||
Sbjct 61 GCGATGGAGGAAACCTGTAACGTGAAAGGAGCGGCGGCGAAACAAGGGGAAGGGCTTAAG 120
Query 381 CAAGTACTACCTCCAGCATC-TCGATGAGCTCCAGCGCCTGCAACGCGAAAAGTCGT-AT 438
| ||||||| |||||||| | || ||||||||||||||| || ||| | ||| | | ||
Sbjct 121 C-AGTACTATCTCCAGCA-CATCCATGAGCTCCAGCGCCAGCTCCGCCAGAAGAC-TAAT 177
Query 439 AACCTTAATCGTCTTGAAGCTCAGAGGAATGAACTCAATTCTC-GAGTACGAATGCTCAG 497
||||| ||||| ||||||||||||||||| ||||||||||| | ||||| ||||||||||
Sbjct 178 AACCTCAATCGCCTTGAAGCTCAGAGGAACGAACTCAATTC-CAGAGTAAGAATGCTCAG 236
Query 498 AGAAGAGTTACAGCTCCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGAT 557
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 AGAAGAGTTGCAGCTGCTTCAAGAACCTGGGTCCTATGTGGGTGAAGTGGTAAAAGTGAT 296
Query 558 GGGAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTCGATATTGA 617
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 297 GGGAAAAAACAAGGTCTTGGTTAAGGTTCATCCAGAGGGAAAGTATGTTGTTGATATTGA 356
Query 618 CAAAAGTATAGACATAACGAAACTCACTCCATCAACGAGAGTTGCTCTCCGTAATGATAG 677
|||||||||||| ||||| ||| |||||||||| |||||||||||||| |||||||||||
Sbjct 357 CAAAAGTATAGATATAACAAAAATCACTCCATCCACGAGAGTTGCTCTTCGTAATGATAG 416
Query 678 CTATGTTCTCCACCTGGTTC-TGCCAAGTAAAGTAGATCC-CTTGGTTAACCTTATGAAA 735
||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||
Sbjct 417 CTATGTTCTCCACCTGG-TCTTGCCAAGTAAAGTAGATCCGC-TGGTTAACCTTATGAAA 474
Query 736 GTTGAGAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATCAAG 795
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 475 GTTGAAAAGGTTCCAGACTCCACATATGACATGATTGGTGGTCTTGACCAGCAAATTAAG 534
Query 796 GAAATAAAGGAGGTCATTGAACTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGA 855
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 535 GAAATAAAGGAGGTCATTGAGCTGCCAATCAAGCATCCTGAATTGTTTGAGTCTCTTGGA 594
Query 856 ATTGCGCAGCCAAAGGGTGTGTTGTTGTACGGTCCACCTGGAACTGGGAAGACACTATTG 915
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 595 ATTGCGCAGCCAAAGGGTGTGTTGTTATATGGTCCACCTGGAACTGGGAAGACACTTTTG 654
Query 916 GCTCGGGCTGTGGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCTGAGCTG 975
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 655 GCTCGGGCTGTTGCACATCACACTGACTGTACTTTCATCAGAGTTTCTGGTTCAGAGCTG 714
Query 976 GTCCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGAGAACTTTTTGTGATGGCAAGG 1035
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 715 GTCCAGAAATACATTGGAGAAGGTTCTAGGATGGTCAGAGAACTTTTTGTGATGGCAAGG 774
Query 1036 GAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATCGGGTCTGCTCGTATG 1095
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 GAGCATGCACCATCAATCATCTTCATGGATGAAATCGATAGTATTGGGTCTGCTCGTATG 834
Query 1096 GAATCTGGTAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAAT 1155
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GAATCTGGAAGTGGAAATGGTGACAGTGAGGTGCAAAGGACTATGCTTGAGCTTCTCAAT 894
Query 1156 CAACTTGACGGATTCGAGGCGTCAAACAAAATCAAGGTTTTGATGGCTACAAATCGTATT 1215
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 895 CAACTTGATGGATTCGAAGCGTCAAACAAAATCAAGGTTTTGATGGCAACAAATCGTATT 954
Query 1216 GATATTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATTGATAGGAAAATTGAATTTCCT 1275
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 955 GATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGGATTGATAGGAAAATTGAATTCCCT 1014
Query 1276 AATCCTAATGAAGAGTCACGTTTTGATATCTTGAAGATACACTCAAGGAAAATGAATTTG 1335
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1015 AATCCTAATGAAGAGTCACGTTTTGATATCTTAAAGATACACTCAAGGAAAATGAATTTG 1074
Query 1336 ATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAG 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGTGCTTCAGGTGCTGAG 1134
Query 1396 CTGAAGGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAGAGGAGAGTACATGTG 1455
||||||||||| |||||||||||||| |||||||| || || ||||||||||| || |||
Sbjct 1135 CTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCGCTGCGGGAGAGGAGAGTTCACGTG 1194
Query 1456 ACTCAGGAAGACTTTGAGATGGCTGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAAC 1515
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1195 ACACAAGAAGACTTTGAGATGGCGGTGGCGAAGGTAATGAAGAAAGACACAGAGAAGAAC 1254
Query 1516 ATGTCTCTGCGTAAGCTCTGGAAGTAGGAAT 1546
|||||||||||||||||||||||||||||||
Sbjct 1255 ATGTCTCTGCGTAAGCTCTGGAAGTAGGAAT 1285
> Ahg932569 jgi|Araly1|932569|scaffold_400557.1
Length=294
Score = 237 bits (128), Expect = 2e-61
Identities = 164/180 (91%), Gaps = 7/180 (4%)
Strand=Plus/Plus
Query 1321 AGGAAAATGAATTTGATGCGTGGAATCGATCTGAAAAAGATTGCAGAGAAGATGAATGGT 1380
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 115 AGGAAAATGAATTTGATGCGTGGGATCGATCTGAAAAATATTGCAGAGAAGATGAATGGT 174
Query 1381 GCTTCAGGTGCTGAGCTGAAGGCTGTATGCACGGAGGCGGGCATGTTTGCACTTCGTGAG 1440
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 175 GCTTCAGGTGCTGAGCTGAAGGCTGTGTGCACGGAGGCGGGAATGTTTGCACTGCGGGAG 234
Query 1441 AGGAGAGTACATGTGAC---T--CA--GGAAGACTTTGAGATGGCTGTGGCGAAGGTAAT 1493
|||||||| || ||||| | || |||||||||||||||||| ||||||||||||||
Sbjct 235 AGGAGAGTTCACGTGACCGGTGACACAGGAAGACTTTGAGATGGCGGTGGCGAAGGTAAT 294
Score = 145 bits (78), Expect = 1e-33
Identities = 95/103 (92%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 1190 AGGTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAA 1249
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 14 AGGTTTTGATGGCGACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTCGAA 73
Query 1250 GGATTGATAGGAAA-A-TTGAATTTCCTAATCCTAATGAAGAG 1290
|||||||||| ||| | ||||||||| ||||| ||||||||||
Sbjct 74 GGATTGATAGAAAACAATTGAATTTCATAATCTTAATGAAGAG 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5