BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20010.1
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941552 jgi|Araly1|941552|scaffold_602096.1 1140 0.0
Ahg941554 jgi|Araly1|941554|scaffold_602098.1 1037 0.0
> Ahg941552 jgi|Araly1|941552|scaffold_602096.1
Length=706
Score = 1140 bits (617), Expect = 0.0
Identities = 675/702 (96%), Gaps = 7/702 (1%)
Strand=Plus/Plus
Query 68 CGATTGCGAAAACATGGCTCTACCTAACCAGCAAACCGTAGATTATCCC-AGCTTCAAGC 126
||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 8 CGATTCCGAAAACATGGCTCTACCTAACCAGCAAACCGTAGATTA-CCCAAGCTTCAAGC 66
Query 127 TTGTCATTGTTGGTGATGGAGGCACAGGGAAGACTACTTTTGTTAAGAGACATCTTACTG 186
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 67 TCGTCATTGTTGGTGATGGAGGCACAGGGAAGACTACTTTTGTGAAAAGACATCTTACTG 126
Query 187 GGGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGATTTCT 246
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GAGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGATTTCT 186
Query 247 TCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGACACTGCTGGACAAGAGAAATTTG 306
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 187 TCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGACACTGCGGGGCAAGAGAAATTTG 246
Query 307 GTGGCCTTAGGGATGGATACTACATCCATGGTCAATGTGCTATAATAATGTTTGACGTCA 366
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 247 GTGGCCTTAGGGATGGATACTACATTCATGGTCAATGTGCCATAATAATGTTTGACGTCA 306
Query 367 CAGCACGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTG 426
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 307 CAGCAAGGCTCACATACAAGAACGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTG 366
Query 427 AAAACATCCCGATTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGG 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AAAACATCCCGATTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGG 426
Query 487 CAAAGCAGGTTACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGA 546
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 427 CAAAGCAGGTGACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGA 486
Query 547 GCAACTACAACTTTGAGAAGCCTTTCTTGTACCTTGCTAGAAAACTGGCTGGAGACCAAA 606
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 487 GCAACTACAACTTTGAGAAGCCCTTCTTGTACCTTGCTAGAAAACTGGCTGGGGACCAAA 546
Query 607 ACCTTCACTTTGTGGAGACACCAGCGCTTGCTCCACCAGAGGTTCACATTGACATTGCTG 666
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 547 ACCTTCACTTTGTGGAGACACCAGCTCTTGCTCCACCAGAGGTTCACATTGACATTGCTG 606
Query 667 ATCAGCAGAAGAACGAGGCCGAGCTCTTACAGGCTGCAGCTCAACCCCTCCCCGATGACG 726
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 607 ATCAGCAGAAGAACGAGGCCGAGCTCTTACAGGCTGCAGCTCAGCCACTCCCCGATGATG 666
Query 727 ATGATGATATCTTTGAGTAAATCATCCTTCTAGAATGTCTGC 768
|||||||| |||||||||||||| | | ||| |||||||||
Sbjct 667 ATGATGATGTCTTTGAGTAAATC-T--T-CTA-AATGTCTGC 703
> Ahg941554 jgi|Araly1|941554|scaffold_602098.1
Length=707
Score = 1037 bits (561), Expect = 0.0
Identities = 651/694 (94%), Gaps = 7/694 (1%)
Strand=Plus/Plus
Query 64 CTCGCG-ATTGCGAAAACATGGCTCTACCTAACCAGCAAACCGTAGATTATCCC-AGCTT 121
||| || ||| ||||||||||||||| ||||||||||||||||| ||||| ||| |||||
Sbjct 3 CTCTCGAATTCCGAAAACATGGCTCTTCCTAACCAGCAAACCGTCGATTA-CCCTAGCTT 61
Query 122 CAAGCTTGTCATTGTTGGTGATGGAGGCACAGGGAAGACTACTTTTGTTAAGAGACATCT 181
|||||| ||||| ||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 62 CAAGCTCGTCATCGTTGGTGATGGAGGCACAGGGAAAACAACTTTTGTGAAGAGACATCT 121
Query 182 TACTGGGGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGA 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 122 TACTGGGGAGTTTGAGAAGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGA 181
Query 242 TTTCTTCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGACACTGCTGGACAAGAGAA 301
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 182 TTTCTTCACAAACTGTGGCAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAA 241
Query 302 ATTTGGTGGCCTTAGGGATGGATACTACATCCATGGTCAATGTGCTATAATAATGTTTGA 361
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 242 ATTTGGTGGCCTCAGGGATGGATACTACATCCATGGTCAATGTGCCATAATAATGTTTGA 301
Query 362 CGTCACAGCACGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGT 421
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGTCACAGCAAGGCTCACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGT 361
Query 422 GTGTGAAAACATCCCGATTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGT 481
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 362 GTGTGAAAACATCCCGATTGTTCTGTGTGGGAACAAAGTCGATGTGAAGAACAGGCAAGT 421
Query 482 GAAGGCAAAGCAGGTTACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGC 541
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 GAAGGCAAAGCAGGTGACATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGC 481
Query 542 AAAGAGCAACTACAACTTTGAGAAGCCTTTCTTGTACCTTGCTAGAAAACTGGCTGGAGA 601
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 482 AAAGAGCAACTACAACTTCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCGGGAGA 541
Query 602 CCAAAACCTTCACTTTGTGGAGACACCAGCGCTTGCTCCACCAGAGGTTCACATTGACAT 661
|||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 542 CCAAAACCTTCACTTTGTCGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACAT 601
Query 662 TGCTGATCAGCAGAAGAACGAGGCCGAGCTCTTA-CAGGCTGCAGCTCAACCCCTCCCCG 720
||||| ||||||| ||||||||||||| ||| | | | | |||||||| || |||||||
Sbjct 602 TGCTGCTCAGCAGCAGAACGAGGCCGATCTCGCAGCTGCC-GCAGCTCAGCCTCTCCCCG 660
Query 721 ATGACGATGATGATATC-TTTGAGTAAATCATCC 753
|||||||||||||| | |||||||||||| |||
Sbjct 661 ATGACGATGATGATG-CATTTGAGTAAATCTTCC 693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40715275356
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5