BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20020.1
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941554 jgi|Araly1|941554|scaffold_602098.1 1125 0.0
Ahg941552 jgi|Araly1|941552|scaffold_602096.1 1002 0.0
Ahg950176 jgi|Araly1|950176|scaffold_802063.1 763 0.0
Ahg357761 jgi|Araly1|357761|fgenesh1_pg.C_scaffold_8001548 520 1e-146
> Ahg941554 jgi|Araly1|941554|scaffold_602098.1
Length=707
Score = 1125 bits (609), Expect = 0.0
Identities = 662/688 (96%), Gaps = 2/688 (0%)
Strand=Plus/Plus
Query 92 ACATGGCTCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGCTCGTCATCGTTG 151
|||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 19 ACATGGCTCTTCCTAACCAGCAAACCGTCGATTACCCTAGCTTCAAGCTCGTCATCGTTG 78
Query 152 GTGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGA 211
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 79 GTGATGGAGGCACAGGGAAAACAACTTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGA 138
Query 212 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGCG 271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 139 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGTG 198
Query 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 199 GCAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTCAGGG 258
Query 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 259 ATGGATACTACATCCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCTCA 318
Query 392 CATACAAGAATGTTCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAAAACATCCCGA 451
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 319 CATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGA 378
Query 452 TTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGTCA 511
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 379 TTGTTCTGTGTGGGAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTGA 438
Query 512 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTACAACT 571
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 439 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTACAACT 498
Query 572 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCTGGAGACCAGAACCTTCACTTTG 631
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 499 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCGGGAGACCAAAACCTTCACTTTG 558
Query 632 TGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCAGA 691
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 TCGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCAGA 618
Query 692 ATGAGGCCGATCTTGCAGCTGCTGCAGCTCAGCCTCTCCCCGATGATGATGATGACGCAT 751
| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 619 ACGAGGCCGATCTCGCAGCTGCCGCAGCTCAGCCTCTCCCCGATGACGATGATGATGCAT 678
Query 752 TTGAGTAAAATCTTCCAAAAATGTCTGC 779
||||||||| |||||||||| |||||||
Sbjct 679 TTGAGTAAA-TCTTCCAAAA-TGTCTGC 704
> Ahg941552 jgi|Araly1|941552|scaffold_602096.1
Length=706
Score = 1002 bits (542), Expect = 0.0
Identities = 645/694 (93%), Gaps = 9/694 (1%)
Strand=Plus/Plus
Query 92 ACATGGCTCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGCTCGTCATCGTTG 151
||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||
Sbjct 19 ACATGGCTCTACCTAACCAGCAAACCGTAGATTACCCAAGCTTCAAGCTCGTCATTGTTG 78
Query 152 GTGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGA 211
||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||
Sbjct 79 GTGATGGAGGCACAGGGAAGACTACTTTTGTGAAAAGACATCTTACTGGAGAGTTTGAGA 138
Query 212 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGCG 271
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 139 AGAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCATTAGATTTCTTCACAAACTGTG 198
Query 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 199 GCAAGATCCGTTTTTACTGCTGGGACACTGCGGGGCAAGAGAAATTTGGTGGCCTTAGGG 258
Query 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 259 ATGGATACTACATTCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCTCA 318
Query 392 CATACAAGAATGTTCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAAAACATCCCGA 451
|||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 319 CATACAAGAACGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGA 378
Query 452 TTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGTCA 511
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 379 TTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTGA 438
Query 512 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTACAACT 571
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 439 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTACAACT 498
Query 572 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAACTGGCTGGAGACCAGAACCTTCACTTTG 631
| |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 499 TTGAGAAGCCCTTCTTGTACCTTGCTAGAAAACTGGCTGGGGACCAAAACCTTCACTTTG 558
Query 632 TGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCAGA 691
||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 559 TGGAGACACCAGCTCTTGCTCCACCAGAGGTTCACATTGACATTGCTGATCAGCAGAAGA 618
Query 692 ATGAGGCCGA--TCTTGCAGCTGCTGCAGCTCAGCCTCTCCCCGATGATGATGATGACG- 748
| |||||||| |||| ||| |||||||||||||| |||||||||||||||||||| |
Sbjct 619 ACGAGGCCGAGCTCTTACAG--GCTGCAGCTCAGCCACTCCCCGATGATGATGATGATGT 676
Query 749 CATTTGAGTAAAATCTTCCAAAAATGTCTGCTGT 782
| |||||||||| ||||| ||| ||||||||||
Sbjct 677 C-TTTGAGTAAA-TCTTCTAAA--TGTCTGCTGT 706
> Ahg950176 jgi|Araly1|950176|scaffold_802063.1
Length=707
Score = 763 bits (413), Expect = 0.0
Identities = 586/670 (87%), Gaps = 10/670 (1%)
Strand=Plus/Plus
Query 94 ATGGC-TCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGCTCGTCATCGTTGG 152
||||| | |||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 21 ATGGCAT-TACCTAACCAGCAAACCGTGGATTACCCTAGCTTCAAGCTCGTCATCGTTGG 79
Query 153 TGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGAA 212
||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 80 TGATGGAGGCACAGGGAAAACCACATTTGTAAAGAGACATCTTACTGGAGAGTTTGAGAA 139
Query 213 GAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCT-TTGGATTTCTTCACAAACTGCG 271
|||||||||||| ||||||||||| |||||||||||| ||| |||||||||| ||||| |
Sbjct 140 GAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTG-ATTTCTTCACTAACTGTG 198
Query 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
| ||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||
Sbjct 199 GCAAGATCCGTTTTTACTGTTGGGATACTGCCGGACAAGAGAAATTTGGTGGTCTGAGGG 258
Query 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
|||| ||||| |||||||| |||||||| || || |||||||| ||||||||| | || |
Sbjct 259 ATGGTTACTATATCCATGGGCAATGTGCCATCATCATGTTTGATGTCACAGCACGTCTGA 318
Query 392 CATACAAGAATGTTCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAAAACATCCCGA 451
|||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 319 CATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAA 378
Query 452 TTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGTCA 511
||||||| ||||| || ||||| ||||| |||||||||||||| ||||| |||||||| |
Sbjct 379 TTGTTCTTTGTGGGAATAAAGTTGATGTCAAGAACAGGCAAGTCAAGGCCAAGCAAGTAA 438
Query 512 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCAGCAAAGAGCAACTACAACT 571
| ||||| |||||||||||||| ||||| || || ||||| || |||||||||||||| |
Sbjct 439 CTTTCCATAGGAAGAAGAATCTCCAGTATTACGAAATATCTGCCAAGAGCAACTACAATT 498
Query 572 TCGAGAAGCCTTTCTTGTACCTTGCTAGGAAA-CTGGCTGGAGAC-CAGAACCTTCACTT 629
|||||||||| ||||||||||||||||| ||| || || || ||| | || ||||||||
Sbjct 499 TCGAGAAGCCATTCTTGTACCTTGCTAG-AAAGCTCGCCGGGGACGCT-AATCTTCACTT 556
Query 630 TGTGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGACATTGCTGCTCAGCAGCA 689
|||||| ||||| || |||||||| || || ||||| | ||||| ||||||||||||||
Sbjct 557 TGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACATGGCTGCTCAGCAGCA 616
Query 690 GAATGAGGCCGATCTTGCAGCTGCTGCA-GCTCAGCCTCTCCCCGATGATGATGATGACG 748
| ||||||| || |||||||| || ||| | |||||| || || ||||| |||||||||
Sbjct 617 GCATGAGGCGGAGCTTGCAGCGGCAGCAAG-TCAGCCACTTCCTGATGACGATGATGACA 675
Query 749 CATTTGAGTA 758
| ||||||||
Sbjct 676 CCTTTGAGTA 685
> Ahg357761 jgi|Araly1|357761|fgenesh1_pg.C_scaffold_8001548
Length=711
Score = 520 bits (281), Expect = 1e-146
Identities = 489/588 (83%), Gaps = 20/588 (3%)
Strand=Plus/Plus
Query 94 ATGGCTCTACCTAACCAACAAACCGTAGATTATCCTAGCTTCAAGC-TCGTCATCGTTGG 152
|||||| || ||||| |||||| ||| |||| ||| | |||||||| || |||| |||||
Sbjct 1 ATGGCTTTATCTAACGAACAAAACGTCGATTGTCCAACCTTCAAGCTTC-TCATTGTTGG 59
Query 153 TGATGGAGGCACAGGGAAAACGACCTTTGTGAAGAGACATCTTACTGGGGAGTTTGAGAA 212
|||||||||| | || ||||| |||||| ||||||||||||| |||||||| |||||| |
Sbjct 60 TGATGGAGGCTCTGGAAAAACCACCTTTTTGAAGAGACATCTGACTGGGGAATTTGAGCA 119
Query 213 GAAGT-ATGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTGCG 271
||| | ||||||||||| |||| ||||||||| ||||||| ||||||||||| ||| |||
Sbjct 120 GAA-TCATGAACCTACTGTTGGGGTGGAGGTTTATCCTTTAGATTTCTTCACTAACCGCG 178
Query 272 GAAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTTAGGG 331
| |||||||||||| | |||||||||||||||||||||||||| | | |||| || | ||
Sbjct 179 GCAAGATCCGTTTTGAATGCTGGGATACTGCTGGACAAGAGAAGTATAGTGGTCTAAAGG 238
Query 332 ATGGATACTACATCCATGGTCAATGTGCGATAATAATGTTTGACGTCACAGCAAGGCTCA 391
||| |||||||||||||||||||||||| ||||| |||||||| ||||| ||| || ||
Sbjct 239 ATGCATACTACATCCATGGTCAATGTGCAATAATCATGTTTGATGTCACCGCACGGAACA 298
Query 392 CATACAAGAATGT-TCCGACATGGCATCGTGATCTTTGCAGGGTGTGTGAA-AACATCCC 449
|||||| ||| || | |||||| | |||||||| ||||||| || || ||||| ||
Sbjct 299 CATACATGAACGTAGAC-ACATGGTACCGTGATCTCCGCAGGGTATG-CAAGAACATTCC 356
Query 450 GATTGTTCTGTGTGGAAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAAGT 509
||||||||||||||| |||||||| |||||| || || ||| | ||| | ||||| ||
Sbjct 357 GATTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCATGT 416
Query 510 CA-CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATC-AGCAAAGAGCAACTAC 567
| | ||||||||||||||| |||||||||||||||||| || | | |||||||| | |
Sbjct 417 -ATCGTTCCACAGGAAGAAGGGTCTGCAGTACTATGAGATGTCTA-CGAAGAGCAATTGC 474
Query 568 AACTTCGAG-AAGCCTTTCTTGTACCTTGCTAGGAA-ACTGGCTGGAGAC-CAGAACCT- 623
|| || ||| || ||||| ||||| ||||||| ||| ||| ||||||||| || || ||
Sbjct 475 AATTTTGAGAAACCCTTT-TTGTATCTTGCTA-GAAGACTTGCTGGAGACGCA-AAACTA 531
Query 624 TCACTTTGTGGAGTCACCAGCTCTTGCTCCACCAGAGGTTCACCTTGA 671
|| ||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 532 TC-CTTTGTGGAGTCACCAGCTCTTGCTCCACCAGAAGCTCACATTGA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39037867008
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5