BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20030.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488900 jgi|Araly1|488900|fgenesh2_kg.6__2034__AT5G20030.1 1568 0.0
> Ahg488900 jgi|Araly1|488900|fgenesh2_kg.6__2034__AT5G20030.1
Length=1125
Score = 1568 bits (849), Expect = 0.0
Identities = 1045/1138 (92%), Gaps = 19/1138 (2%)
Strand=Plus/Plus
Query 1 CTTTTGATCCAAGTTTGGTTGCCCAGAAATATCAAAGaaaaaaaaaCAAAGCTTTGTTGT 60
||||||||||| ||||||||||||||||| ||||||| | ||||||||| |
Sbjct 1 CTTTTGATCCATGTTTGGTTGCCCAGAAA-ATCAAAG-AGGAAAAACAAAAAAACAAAGC 58
Query 61 TTCTGGCAGTAGAATCATTCATGGCTTTCTTTGCGTGTTAAACATTCACTAACCTAAAAA 120
|| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 59 TT-T-GTAGTAGAATCATTCATGGCTTTCTTTGCGTGTTAAACATTCACTAACCT-AAAA 115
Query 121 C-T-AAAACTTCGTTTTCAGCAATCATGAGATTCAACAAGGGAACTAAAGTCGAAGTGTT 178
| | | || | ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 116 CTTCGTATTTTTG-AAGCAGCAATCATGAGATTCAAGAAGGGAACTAAAGTCGAAGTGTT 174
Query 179 GAGCAAATCATCGGTTCCATCTGGCGCCTGGCGGTCTGCAGAGATCATATCAGGAAATGG 238
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 175 GAGCAAATCATCGGTTCCATCTGGTGCCTGGCGGTCTGCAGAGATCATATCGGGAAATGG 234
Query 239 GCATTACTACACTGTCATGTATGATCATAATGATGGTACAGAGAGGGTACCGAGGAAGAG 298
|||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 235 GCATTATTACACTGTCATGTATGATCATGATGGTGGTACGGAGAGGGTACCGAGGAAGAG 294
Query 299 TATGAGGCCTGAGCCTCCTCGTTTACAAGTTCTTGATGCTTGGTGTCCTGGTGACATTCT 358
||||||||| |||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 295 TATGAGGCCCGAGCCTCCTCGTTTACAAGTCCTTGATTCTTGGGGTCCTGGTGACATTCT 354
Query 359 TGAGGTTTTCCAAAGTTGTTCGTGGAAGATGGCAATCGTTTCCAAGGTTTTAGG-AAACG 417
|||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 355 TGAGGTTTTCGAAAGTTGTTCGTGGAAGATGGCAATCGTTTCCAAGGTTTT-GGAAAAAG 413
Query 418 GTTGTTTCTTGGTTAGATTACTTGGTTCCTCACTGAAGTTCAAGGTGACTAAATCCGATA 477
||||||||||| |||||||||||||||| ||| ||||||||||||| || |||||||| |
Sbjct 414 GTTGTTTCTTGATTAGATTACTTGGTTCTTCAGTGAAGTTCAAGGTAACCAAATCCGACA 473
Query 478 TTCGGGTTAGACAATCTTGGCAAGATAACGAGTGGATCATGATTGGACAGGGTACATCAA 537
|||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct 474 TTCGGGTTAGACAATCTTGGCAGGATAACGAGTGGATCATGATCGGACAGGGTGCATCAA 533
Query 538 GATTAAGCGCACAGACTTCAACAGGAGAACTAAGGAGAAAGGTGAATCCGAAAGGCGACT 597
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 534 GATTAAGCGCACAGACTTCAACAGGAGAATTAAGGAGAAAGGTGAATCCGAAAGCCGACT 593
Query 598 ACATTTCATCTGAGAGCAAAGACAAGCTTGATGAGTCTGATGTACCTTTGTCAGTAGGTC 657
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||
Sbjct 594 ACATTTCATCTGAGAGCAAAGACAAGCTCGATGAGACTGATGTACCTTTGTCAAAAAGTC 653
Query 658 TAAAGAAACGGACTTACTCTTTGGTTGAACCTCACAATCAAACTAGAGCTTTAGCTGCTT 717
||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||
Sbjct 654 TAAAGAAACGGACTTACTCTTTGGTTGAACCACATAATCAAACTAGAGTTTTA---GCTT 710
Query 718 ATCCTCCAAGGTTTCGTgaagaagtgaaagaagaagaagaagatagagagaGTGTTGCTT 777
||||||||| ||||| |||| ||| | || ||||||||||||||||||||||||||||||
Sbjct 711 ATCCTCCAAAGTTTCATGAAAAAG-G-AA-AAGAAGAAGAAGATAGAGAGAGTGTTGCTT 767
Query 778 CTTCTGTTGGTAGTTGTTGCATGGATACTGATGGTCTCAGTGCTGTTTCATTCAATCCCA 837
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 768 CTTCTGTTGGTAGTTGTAGCATGGATACGGATGGTCTCAGTGCTGTTTCATTCAATCCCA 827
Query 838 TTGAAACCGGTAACTCTAGTGACACAGAGTCATCGTCTTGTGGCTACGGGAAGGTCAAGA 897
|||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 828 TTGAAACCGGTAGCTCTAGTGACACAGAGTCATCATCTTGTGGCTACGGGAAGATCAAGA 887
Query 898 AGTTGGTGG-T--TCCAAGAAAAGGCTCAGAGGCTGCTGATGTTCATAGGTTAGAGCTGG 954
|||||| || | ||||| |||| |||||||||||||||||||||||||| ||||| |||
Sbjct 888 AGTTGGGGGTTCCTCCAATAAAAAGCTCAGAGGCTGCTGATGTTCATAGGCTAGAGTTGG 947
Query 955 ATGCATACCGAAGCAGTATCGAGAGATTGCACGCATCCGGACCAATCATAACATGGGAAC 1014
||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 948 ATGCATACCGATGCAGTATCGAGAGATTGCACGCATCTGGACCAATTATAACTTGGGAAC 1007
Query 1015 AAGAAACGTGGATTACAAATCTCCGTCTCAAATTGAACATTTCGAATGAGGAACATCTGA 1074
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1008 AAGAAACGTGGATAACAAATCTCCGTCTCAGATTGAACATTTCGAATGAGGAACATCTGA 1067
Query 1075 TGCAGATAAGAAACCTTATCTCTGACGATAACAGTACTATATACAGATAGCAGCAGCA 1132
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1068 TGCAGATAAGAAACCTTATCTCTGATGATAACAGTACAATATACAGATAGCAGCAGCA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5