BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20040.3
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488901 jgi|Araly1|488901|fgenesh2_kg.6__2035__AT5G20040.1 2200 0.0
Ahg906319 jgi|Araly1|906319|Al_scaffold_0003_3447 121 2e-26
> Ahg488901 jgi|Araly1|488901|fgenesh2_kg.6__2035__AT5G20040.1
Length=1625
Score = 2200 bits (1191), Expect = 0.0
Identities = 1386/1477 (94%), Gaps = 26/1477 (2%)
Strand=Plus/Plus
Query 204 GTTTATAATGGTGATTGGCAGTGGCGTATTTTTGACCCGTACCTGTTACTTG-AGACTTC 262
|||||||||||| ||| ||||||||||||||||||||||||| ||||||||| || || |
Sbjct 141 GTTTATAATGGTCATTAGCAGTGGCGTATTTTTGACCCGTACATGTTACTTGAAG-CTGC 199
Query 263 AACCGCCAAGCCTTGTACTGCGCCGGAGATTCTGCGCAGCCACCACGGCCTGCTCTGTTC 322
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 200 AACCGCCAAGCCTTGTACTGCGCCGGAGATTCTGCGCAGCCACAACGGATTGCTCTGTTC 259
Query 323 CTCTGAACGGGAACAAGAAGAAAAAGTCTGAAAAGGAGAAGGTGATTGTGATTTCTGGGC 382
|||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 260 CTCTGAACGGGACCAAGAAGAGAAAGTCTGAAAAGGAGAAGGTCATTGTGATTTCTGGGC 319
Query 383 CCACCGGCGCAGGAAAGAGCAGACTTGCCATGGAGCTCGCTAAGCGACTCAATGGCGAAA 442
|||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 320 CCACCGGCGCCGGAAAAAGCAGACTTGCTATGGAGCTCGCCAAGCGTCTCAATGGCGAAA 379
Query 443 TCATCAGTGCTGACTCCGTTCAGGTGTATAAAGGCCTTGATGTTGGATCAGCCAAGCCAT 502
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 380 TCATCAGTGCTGACTCCGTTCAGGTGTACAGAGGCCTTGATGTTGGATCAGCCAAGCCAT 439
Query 503 CAGATAGCGATAGAAAGGTGGTGCCTCATCATCTTATCGACATTTTGCATCCGTCTCAAG 562
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 440 CAGATAGCGATAGAAAGGTGGTGCCTCATCATCTTATAGACATTTTGCATCCGTCTCAAG 499
Query 563 ACTACTCTGTGGGGCAATTTTATGATGATGGAAGGCAAGCTACCAAAGATATTCTTAATA 622
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 500 ACTACTCTGTGGGGCAATTTTTTGATGATGGAAGGCAAGCTACCAAGGATATTCTTAATA 559
Query 623 GAGGGCGTGTTCCCATTGTTACGGGTGGAACTGGATTGTATCTGCGATGGTTTATGTATG 682
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 560 GAGGGCGTGTTCCCATTGTTACGGGTGGCACTGGATTGTATCTGCGATGGTTTATCTATG 619
Query 683 GGAAGCCGGATGTGCCTAAACCTTCTCCAGAAGTTATCGCTGAGGCCCATGATATGCTAG 742
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 620 GGAAGCCGGATGTGCCTAAACCTTCTCCAGAAGTCATCGCTGAGGCCCATGATATGCTAG 679
Query 743 TTGGTTTTCAAACCGAATATAACTGGGACGCAGCTGTGGAGTTGGTGGTCAATGCTGGTG 802
||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 680 TTGATTTTCAAACCGAATATAACTGGGAAGCAGCTGTGGAATTGGTGGTCAATGCTGGTG 739
Query 803 ATCCAAAAGCTTCTTCTTTACCTCGTAATGATTGGTACAGACTACGCCGTAGCCTCGAGA 862
|||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 740 ATCCAAAAGCCTGTTCTTTACCTCGTAATGATTGGTACAGACTACGTCGTAGCCTCGAGA 799
Query 863 TACTCAAGTCAACTGGATCGCCTCCGTCTTCCTTTCGCATTCCTTATGATTCCTTT-CGA 921
||||||||||||||||||| || |||||||||||||||||||| ||||||| |||| |||
Sbjct 800 TACTCAAGTCAACTGGATCTCCGCCGTCTTCCTTTCGCATTCCATATGATT-CTTTCCGA 858
Query 922 GTAAATTT-AGTTGCTCCTGATGCTGATGACTTCCTTGAGGACGGTTCATCTGCCGATAT 980
| |||||| | || |||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 859 GAAAATTTAAATT-CTCCTGATGCCGATGACTTGCTTGAGGACGGTTCATCTGCTGATAT 917
Query 981 CTCTATCCAAAACATAGAGACAGATTTGGACTATGACTTTCTTTGTTTTTTCTTGTCAAG 1040
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 918 CTCCATCCAAAACATAGAGACAGATTTGGACTATGACTTCCTTTGTTTTTTCTTGTCAAG 977
Query 1041 CCCACGGGTTGCTCTCTACAGATCTATTGATTTCAGATGTGAAGACATGCTTTCAGGACC 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 CCCACGGGTTGCTCTCTACAGATCTATTGATTTCAGATGTGAAGACATGCTTTCAGGACC 1037
Query 1101 CAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1038 CAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACACAAA 1097
Query 1161 TCCTGCAACTCGTGCCATTGGGTACAGACAGGTGAACTCTTTATTTCCTGCCATGGAATA 1220
||||||||||||||| |||||||||||||||| | | || | | ||||
Sbjct 1098 TCCTGCAACTCGTGCTATTGGGTACAGACAGG----C-C---AT-----G----G-AATA 1139
Query 1221 TCTATT-ACAATGTCGTCGATATGAGGGCGAAAGTTCCCCTAGAGAATTTTATGCTTTCT 1279
|||| | | |||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1140 TCTACTGA-AATGCCGTCGATATGAGGGTGAAAGTTCCCCTAGAGAATTTTATGGTTTCT 1198
Query 1280 TGAACAAATTTCAGACAGCATCCAGAAACTTTGCAAAAAGGCAAATGACATGGTTCCGGT 1339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1199 TGAACAAATTTCAGACAGCATCCAGAAACTTTGCAAAAAGGCAAATGACATGGTTCAGGT 1258
Query 1340 GTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTGGATTCAATACTTCAATGCA 1399
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 1259 GTGAGCCTATGTACCACTGGCTTAATGCTTCTAAACCTCTGGATTCGATACTTCAATGCA 1318
Query 1400 TATACGATGCTTATGAGAGCGAAGCAGAGATGGTGGAGATACCGGAGTCTCTAAGAATGA 1459
|||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1319 TATATGATGCTTATGAGAGCGAAGCAGAGACGGTGGAGATACCAGAGTCTCTAAGAATGA 1378
Query 1460 GCAAAGACGTAAGAGATTCTCGAGAAGCTTCTGAACTAAAGGGGTATCGCTCCAAAAACA 1519
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct 1379 GCAAAGACGTAAGAGATTCCCGAGAAGCTTCTGAACTAAAGTTGTACCGCTCCAAAAACA 1438
Query 1520 GGCATTTCGTAAGACGAGAGGACTGTTCTTCGGTGTTAGAATGGATCAGGAGTGAAGGAT 1579
|||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1439 GGCATTTCGTAAGACGAGAGGACTGTGATTCGGTGTTAGAGTGGATCAGAAGTGAAGGAT 1498
Query 1580 GTAAGAGTGAAGCTTCATGCGTGGAAAGCGCAATAGCATAAACACTGCTTCATTTTATCC 1639
|||||| |||||||||||| |||||||||||| |||||||| |||||||||||| |||||
Sbjct 1499 GTAAGACTGAAGCTTCATGTGTGGAAAGCGCAGTAGCATAACCACTGCTTCATTCTATCC 1558
Query 1640 GGaaaagccaaaaccaaaaccaaaacaaaaGTGTGTT 1676
|||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGAAAAGCCAAAACCAAAACCAAAACAAAAGTGTGTT 1595
Score = 150 bits (81), Expect = 3e-35
Identities = 94/100 (94%), Gaps = 2/100 (2%)
Strand=Plus/Plus
Query 25 GTTCGGTTTATGTGTAAACCTAACCGAACCGTAGTTCTCTAATCCCTTGCTCAC--TGTC 82
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 GTTCGGTTAATGTGTAAACCTAACCGAACCGTAGTTCTCTAATCCCTTGCTCACACTGTC 60
Query 83 TTCGTCTCTCTTCGAGATGAGCTTTCGCGCGGGTCGTCCT 122
|||||||||||||||||||||||| ||||||||| ||||
Sbjct 61 GTCGTCTCTCTTCGAGATGAGCTTTTGCGCGGGTCATCCT 100
> Ahg906319 jgi|Araly1|906319|Al_scaffold_0003_3447
Length=468
Score = 121 bits (65), Expect = 2e-26
Identities = 92/104 (88%), Gaps = 5/104 (5%)
Strand=Plus/Minus
Query 249 TTACTTGAGACTTCAACCGCCAAGCCTTGTACTGCGCCGGAGATTCTGCGCAGCCACCAC 308
||||||||| || ||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 468 TTACTTGAGGCTGCAACCGCCAAGCCTTGTACTGCGCCGGAGATTCTGCGGAGCCGCC-- 411
Query 309 GGCCTGCTCTGTTCCTCTGAACGGGAAC-AAGAAGAAAAAGTCT 351
| | | |||||||||||||||||||| | ||||||| |||||||
Sbjct 410 G-CTTCCTCTGTTCCTCTGAACGGGA-CGAAGAAGAGAAAGTCT 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65934214095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5