BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20045.1 Length=631 Score E Sequences producing significant alignments: (Bits) Value Ahg941557 jgi|Araly1|941557|scaffold_602101.1 390 5e-108 > Ahg941557 jgi|Araly1|941557|scaffold_602101.1 Length=278 Score = 390 bits (211), Expect = 5e-108 Identities = 248/265 (94%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 11 TCCAAATTAAGGCGCCATAAGATGCAAAGGTTACAAATAAGTTCTCGGCCATCTGAAGAG 70 |||||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||| Sbjct 3 TCCAAATTAAGGTGCC-T--GATGCAAAGGTTACAAACAAGTTCTCGGCCATCTGAAGAG 59 Query 71 TTTCTGATTAACCTCTCGGTGGATTCCGCAAGCCCTGACGGTCTCGTGGTCTACGACGAC 130 |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 60 TTTCTGATTAACCTCTCGCCGGATTCCGCAAGCCCTGACGGTCTCGTGGTCTATGACGAC 119 Query 131 ATAGCCAAGAAGGAACTGTCTCTACACAACAATAGTTACAAGTCTGCTAATGGAGAGAGA 190 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 120 ATAGCCAAGAAGGAACTGTTTCTACACAACAATAGTTACAAGTCTGCTAATGGAGAGAGA 179 Query 191 GCTATTCACCTAATCCCTATTGTTCTCTTTCTATGTGGTTTTATGCTTTGGGTTTTCTCA 250 |||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||||||| Sbjct 180 GCTATTCATCTAATCCCTCTTGTTCTCTTTCTATGTGGTTTTGTTCTTTGGGTTTTCTCA 239 Query 251 AGTGCAACT-AT--ATAATTACTAT 272 | ||||||| || ||||||||||| Sbjct 240 AATGCAACTCATGTATAATTACTAT 264 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23102487702 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5