BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20045.1
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941557 jgi|Araly1|941557|scaffold_602101.1 390 5e-108
> Ahg941557 jgi|Araly1|941557|scaffold_602101.1
Length=278
Score = 390 bits (211), Expect = 5e-108
Identities = 248/265 (94%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 11 TCCAAATTAAGGCGCCATAAGATGCAAAGGTTACAAATAAGTTCTCGGCCATCTGAAGAG 70
|||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 3 TCCAAATTAAGGTGCC-T--GATGCAAAGGTTACAAACAAGTTCTCGGCCATCTGAAGAG 59
Query 71 TTTCTGATTAACCTCTCGGTGGATTCCGCAAGCCCTGACGGTCTCGTGGTCTACGACGAC 130
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 TTTCTGATTAACCTCTCGCCGGATTCCGCAAGCCCTGACGGTCTCGTGGTCTATGACGAC 119
Query 131 ATAGCCAAGAAGGAACTGTCTCTACACAACAATAGTTACAAGTCTGCTAATGGAGAGAGA 190
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATAGCCAAGAAGGAACTGTTTCTACACAACAATAGTTACAAGTCTGCTAATGGAGAGAGA 179
Query 191 GCTATTCACCTAATCCCTATTGTTCTCTTTCTATGTGGTTTTATGCTTTGGGTTTTCTCA 250
|||||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 180 GCTATTCATCTAATCCCTCTTGTTCTCTTTCTATGTGGTTTTGTTCTTTGGGTTTTCTCA 239
Query 251 AGTGCAACT-AT--ATAATTACTAT 272
| ||||||| || |||||||||||
Sbjct 240 AATGCAACTCATGTATAATTACTAT 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23102487702
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5