BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20050.1
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488903 jgi|Araly1|488903|fgenesh2_kg.6__2037__AT5G20050.1 2364 0.0
> Ahg488903 jgi|Araly1|488903|fgenesh2_kg.6__2037__AT5G20050.1
Length=1528
Score = 2364 bits (1280), Expect = 0.0
Identities = 1466/1551 (95%), Gaps = 32/1551 (2%)
Strand=Plus/Plus
Query 1 GAAATATTTCGTCTTTGTTCTCGTCACCAGAGTGCTT-ATC----TG---AAAGAAATGA 52
||||||||||||||||||||| ||||| |||||| || ||| | ||| ||||||
Sbjct 1 GAAATATTTCGTCTTTGTTCTGGTCACGAGAGTG-TTCATCAGAAGGAAAAAAAAAATGA 59
Query 53 AGTCAGAGAAGCTCTAAAAGACC-TCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 111
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 60 TGTCAGAGAAGCTCTAAAAG-CCTTCTAATGGAGGACAAGAAAGCAAACATAATCGCTAC 118
Query 112 TATATTAATCTTAGCCCTTGTCGTAGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 171
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 119 TATATTAATCTTAGCCCTTGTCGTGGTGATAATCGCCGCCCGAGTTTCTCTAAAACTCTC 178
Query 172 CAAAACATTCTATCTCATAGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 231
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAAAACATTCTATCTCATCGCCGGCGTCGACATTTCCTTGATCCTCGCCGTGATCTGTTT 238
Query 232 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTCGCCTC 291
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 239 CCTCATAATCCGTAGCCGTTACAACAAAGAAAGAAAGCTCTTGGTATCAAGATTTGTCTC 298
Query 292 CGAAGGCAGAGAGCTACGAATCGAGTACAGTTTCTTGAGAAAAGTCGCCGGAGTTCCAAC 351
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 299 CGAAGGCAGAGAGCTCCGAATCGAGTACAGTTTCTTGAGAAAAGTCGCAGGGGTTCCAAC 358
Query 352 CAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAATTCAAGCTCGAAGATCTTGAAGAAGCCACCGATGGATTCAGATCTTTGATCGGAAA 418
Query 412 AGGCGGTTCCGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTgaa 471
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGGCGGTTCTGGTTCGGTGTTTAAAGGAGTTTTGAAAGACGGAAGTCAAGTAGCTGTGAA 478
Query 472 gagaatcgaaggagaagagaaaggagaaagagagTTCAGATCCGAAGTAGCTGCCATAGC 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGAATCGAAGGAGAAGAGAAAGGAGAAAGAGAGTTCAGATCCGAAGTAGCTGCCATAGC 538
Query 532 TTCCGTTCAGCACAAGAATCTAGTTCGTCTTTACGGTTATTCGTCTTCGACTAGCGCGAA 591
||| |||||||||||||| ||||||||||||||||||||||||||| || | ||||||
Sbjct 539 TTCTGTTCAGCACAAGAACCTAGTTCGTCTTTACGGTTATTCGTCTGCGGTTTCCGCGAA 598
Query 592 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCGTCCGAGATTCCTCGTTTACGATTATATCGTAAACTCGTCTCTCGATATCTGGATTTT 658
Query 652 TCCGGATAGAGGAAACAGAGGAAGATCCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 711
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 659 TCCGGATAGAGGAAACAGAAGAAGATGCGGAGGAGGATGCTTGTCTTGGGAACAAAGGTA 718
Query 712 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CCAAGTTGCTATTGATGTAGCTAAAGCTCTTGCTTATCTTCATCATGATTGTCGATCTAA 778
Query 772 GATCTTGCATCTCGATGTTAAACCCGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 831
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 779 GATCTTGCATCTTGATGTTAAACCTGAAAACATTCTACTAGACGAGAATTTCCGAGCGGT 838
Query 832 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTACTAACGGA 891
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 GGTAACCGATTTCGGACTCTCTAAGCTGATTGCTAGAGATGAGAGCAGAGTGCTAACGGA 898
Query 892 TATCCGTGGTACTCGGGGGTATTTAGCCCCCGAGTGGCTTCTTGAACACGGTATTTCGGA 951
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 TATCCGTGGGACTCGGGGGTATTTAGCCCCCGAATGGCTTCTTGAACACGGTATTTCGGA 958
Query 952 GAAATCCGATGTGTATAGCTACGGGATTGTGTTACTAGAGATGATCGGAGGACGGAGAAG 1011
||||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 959 GAAATCCGACGTTTACAGCTACGGGATTGTGTTACTAGAAATGATCGGAGGACGGAGAAG 1018
Query 1012 CATTTCAAGGGTAGAAGTTAAGGAAACAAAAAAGAAGAAATTAGAGTATTTCCCAAGGAT 1071
||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1019 CATTTCAAGGGTAGAGGTTAAGGAAACAAAAAAGAAGAAGTTGGAGTATTTCCCAAGGAT 1078
Query 1072 TGTGAACCAAAAGATGAGAGAAAGAAAGATAATGGAGATTGTTGATCAAAGGCTGATTGA 1131
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1079 TGTGAACCAAAAGATGAGAGAAAGAAAAATAATGGAGATTGTAGATCAAAGGCTGATAGA 1138
Query 1132 AGTTAATGAGGTAGATGAAGAGGAAGTGATGAAATTGGTGTGTGTGGCTTTGTGGTGTAT 1191
|| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1139 AGCCAATGAGGTAAATGAAGAGGAAGTGATGAAATTGGCGTGTGTGGCTTTGTGGTGTAT 1198
Query 1192 ACAAGAGAAGTCTAAGAAAAGGCCTGATATGACTATGGTTATTGAGATGCTTGAAGGGAG 1251
||||||||| |||||||| |||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 1199 ACAAGAGAAATCTAAGAATAGGCCTGATATGACTATGGTAATTGAAATGATTGAAGGGAG 1258
Query 1252 AGTTCCGGTGAACGAGCCACCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1311
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGTTCCGGTGAACGAGCCGCCGGATTCAGATGTTGTTGTGGTCGATCTTTTGGCGGCTGA 1318
Query 1312 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAGTAAATATCCCGAAATTGCAAATCCA 1371
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 TGATGATGATGCAAGTACCGGTGTTCGACGGGTAATAAATATCCCGAAATTGCAAATCCA 1378
Query 1372 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATCTCTCC 1431
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1379 TAGGGAGAGGAATTTTCGTTTATCATCCATTTGCTCTAGTATCATATCTCCCATATCTCC 1438
Query 1432 ACGCTAGTTATTTTTGTGTGTTCATATTGGTTTTGTTTCAATCAAAAACTGAGTATGTTT 1491
||||||| |||||||| | || | ||| ||||| ||||||||||||||||
Sbjct 1439 ACGCTAG--ATTTTTGT-T-TT------G-TTT-----CAATCTAAAACTGAGTATGTTT 1482
Query 1492 GGTGTGTTACTATTAATCAACCTTTGATACGTATAATAAACACAATTTATA 1542
||||||||||||||||||| ||||||| ||| | |||||||||||||||
Sbjct 1483 GGTGTGTTACTATTAATCA---TTTGATATGTA-A-TAAACACAATTTATA 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57820991910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5