BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20070.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488907 jgi|Araly1|488907|fgenesh2_kg.6__2041__AT5G20070.1 2259 0.0
> Ahg488907 jgi|Araly1|488907|fgenesh2_kg.6__2041__AT5G20070.1
Length=1481
Score = 2259 bits (1223), Expect = 0.0
Identities = 1355/1420 (95%), Gaps = 3/1420 (0%)
Strand=Plus/Plus
Query 15 AAACAATGGGGAGACGAAACCAGAGATGCTTGctctcttcctctcttcttcttcgtatcc 74
|||||||||||||| |||| |||||||||| |||||||| ||||| ||||||||||||||
Sbjct 2 AAACAATGGGGAGAAGAAAACAGAGATGCTCGCTCTCTTTCTCTCCTCTTCTTCGTATCC 61
Query 75 aactctctctttcctctccAGATCAGTAACTCTAAACTTAGCCAGAACAACAACACTCTC 134
||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 62 AACTCTCTCTTTCTTCTCCAGATCAGTAACTCTAAACTTAGCAAGAAGAACAACACTCTC 121
Query 135 AGCTCTCACAATGTCGATGAACCTAAAGACTCATGCCTTCGCAGGCAATCCCTTGAAGTC 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TGCTCTCACAATGTCGATGAACCTAAAGACTCATGCCTTCGCAGGCAATCCCTTGAAGTC 181
Query 195 GAAAACTCCGAAATCTACCGATCCATTCTCACCCACCTCCGCTTTCGAATCTCTGAAAAC 254
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 182 CAAAACTCCGAAATCCACCGATCCTTTCTCACCCACCTCCGCTTTCGAATCCCTGAAAAC 241
Query 255 CCTAATTCCAGTAATCCCTAATCACTCAACACCTTCCCCTGATTTTAAAGTCCTTCCCTT 314
|||||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct 242 CCTAATTCCAGTGATCCCAAATCACTCCACACATTCCCCTGATTTTAAAGTCCTTCCCTT 301
Query 315 TAGCAAGGGTCGTCCACTGGTGTTCTCAAGCGGTGGAGATGCTAATACGACGCCGATTTG 374
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 302 TAGCAAAGGCCGTCCACTGGTGTTCTCGAGCGGTGGAGATGCTAATACGACGCCGATTTG 361
Query 375 GCATCTGGGTTGGGTCAGCTTGGCTGATTGTAAGGTTTTGTTAGCAAGTTGTGGGGTTGA 434
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 362 GCATCTGGGTTGGGTCAGCTTGGCTGATTGTAAGGTTTTGTTAGCGAGTTGTGGGGTTGA 421
Query 435 TCTGAATGAGGACTCACTCGTGTATTTAGGACCCAAGTTGGAAGAAGATTTGGTGTATTG 494
|||||| |||||||| || ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 422 TCTGAACGAGGACTCGCTTGTGTATTTAGGTCCCAAGGTGGAAGAAGATTTGGTGTATTG 481
Query 495 GGCTGTTGATTTGGCAGAGGATGGTTTCGTTTCTGAATTGGGAGGTAGGAAGTTGTGTTT 554
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 482 GGCTGTTGATTTGGCAGAGGATGGTTTCGTTTCTGAATTGGGAGGGCGGAAGTTGTGTTT 541
Query 555 TGTTGAGCTTCGAACCCTAATGGTAGCTGCTGATTGGGCGGATCAACGTGCTATGGATGA 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TGTTGAGCTTCGAACCCTAATGGTAGCTGCTGATTGGGCGGATCAACGTGCTATGGATGA 601
Query 615 GTTGGCTATTGCCGGCAATGCCAGGGCGTTACTTGAATGGCACAACGTGTCACAATTTTG 674
|||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||
Sbjct 602 ATTGGCTATTGCCGGCAATGCCAGGGCATTACTTGAATGGCACATCGTATCACGATTTTG 661
Query 675 TGGATCATGTGGAAGTAAAACTTTTCCAAAGGAAGCAGGAAGGAGAAAACAATGCTCAGA 734
|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 662 TGGATCTTGTGGAGGTAAAACTGTTCCAAAGGAAGCAGGAAGGAGAAAACAATGCTCAAA 721
Query 735 CGAAACATGCAGAAAGAGGGTCTATCCCCGTGTTGATCCGGTGGTTATAATGTTAGTTAT 794
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 722 CGAAACATGCAGAAAGAGGGTCTATCCCCGTGTTGACCCGGTGGTTATTATGTTAGTTAT 781
Query 795 TGATCGAGAAAATGATCGCGCACTTTTAAGCAGGCAATCTAGATATGTACCGAGAATGTG 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TGATCGAGAAAATGATCGCGCACTTTTAAGCAGGCAATCTAGATATGTACCGAGAATGTG 841
Query 855 GAGTTGTTTAGCTGGATTTATTGAGCCAGGGGAAAGCTTAGAAGAGGCTGTGAGGCGGGA 914
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GAGCTGTTTAGCTGGATTTATTGAGCCAGGGGAAAGCTTAGAAGAGGCTGTGAGGCGGGA 901
Query 915 AACATGGGAAGAGACAGGCATTGAAGTAGGAGATGTTGTATACCACAGCTCTCAGCCTTG 974
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 902 AACATGGGAAGAGACAGGCATTGAAGTAGGAGAAGTTGTCTACCACAGCTCTCAGCCTTG 961
Query 975 GCCTGTGGGACCAAGTAGCATGCCATGCCAATTGATGCTCGGTTTCTTTGCTTTCGCCAA 1034
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 962 GCCTGTGGGACCAAGTAGCATGCCATGCCAATTGATGCTGGGGTTCTTTGCTTTCGCCAA 1021
Query 1035 GACGCTCGACATAAACGTAGACAAAGAAGAGTTAGAAGATGCTCAATGGCACAGTAGAGA 1094
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 GACGCTTGACATAAACGTAGACAAAGAAGAGTTAGAAGATGCTCAATGGCACAGTAGAGA 1081
Query 1095 AGAGGTGAAGAAAGCATTGGCGGTTGCAGAATACAGGAAGGCTCAAAGAACAGCAGCTGC 1154
|||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||
Sbjct 1082 AGAGGTGAAGAAAGCACTGGCGGTTGCAGAATACAGGAAAGCGCAAAGAACAGCGGCTGC 1141
Query 1155 AAAGGTAGAGCAGATCTGTAAAGGTGTGGAGAGAAGCCAGAGTCTATCAACTGATTTCAA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AAAGGTAGAGCAGATCTGTAAAGGTGTGGAGAGAAGCCAGAGTCTATCAACTGATTTCAA 1201
Query 1215 TCTTGAAAGCGGTGAGCTTGCTCCTATGTTTATCCCGGGGCCATTTGCCATCGCGCACCA 1274
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1202 TCTCGAAAGCGGTGAGCTTGCTCCTATGTTTATCCCAGGGCCATTTGCCATTGCGCACCA 1261
Query 1275 CCTGATCTCAGCATGGGTAAATCAGGCTCCTGACGATGTTCACTCAAAACAACAAGCGGG 1334
||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||
Sbjct 1262 CCTGATCTCAGCATGGGTAGATCAAGCTCCTGGCGATGTTCACTCAAAACAACAAGCCGG 1321
Query 1335 TGTCTCTCTCTCAAGTTTGTAGCTAGAAAGATGAACTTAGATGCTTAGAAACCAAACGTT 1394
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1322 TGTCTCTCTCTCAAGTTTGTAGCTAGAAAGATGAGTTT-GATGCTTAGAAACCAAACGTT 1380
Query 1395 TGCTATGGCTTCT-ATGCTTATTTTGAATTGCTGAGTCCT 1433
|||||||| |||| || | ||| |||||||| ||||||||
Sbjct 1381 TGCTATGG-TTCTGATACGTATCTTGAATTGATGAGTCCT 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5