BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20080.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941561 jgi|Araly1|941561|scaffold_602105.1 1729 0.0
> Ahg941561 jgi|Araly1|941561|scaffold_602105.1
Length=1033
Score = 1729 bits (936), Expect = 0.0
Identities = 993/1021 (97%), Gaps = 1/1021 (0%)
Strand=Plus/Plus
Query 118 TTCTTTCTCAGAGATCT-AAACCATCATGGCTACTTCCTTCTTCCGGCGACTCGCTAGGT 176
||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TTCTTTCTCCGAGATCTAAAACCATCATGGCCACTTCCTTCTTCCGGCGACTCGCTAGGT 60
Query 177 CAGCTCCGATTACATTCCCTGTCGCATTTGGATCTCAAAGCAAATCTGGTTCTGGCGCTT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGCTCCGATTACATTCCCTGTCGCATTTGGATCTCAAAGCAAATCTGGTTCTGGCGCTT 120
Query 237 TCCGGTTCTCCACCGGTGCAATCGCGGCACTTTCCGGTGGATTCTCCTATTACTACTTGA 296
|||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 121 TCCGATTCTCTACCGGTGCAATCGCGGCACTTTCCGGCGGGTTCTCCTATTACTACTTAA 180
Query 297 CATCCGGCAACAATCTGGTTTATCTGGATCAAGCTAAGGAAGAGACAGGACCAAAAACCG 356
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CATCCGGCACCAATCTGGTTTATCTGGATCAAGCTAAGGAAGAGACAGGACCCAAAACCG 240
Query 357 CTCTAAACCCTGATAAATGGCTCGAGTTCAAGCTTCAAGACACTGCTAGAGTTAGCCACA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCTAAACCCTGATAAATGGCTCGAGTTCAAGCTTCAAGACACTGCTAGAGTTAGCCACA 300
Query 417 ACACTCAGTTGTTCAGGTTCTCATTTGACCCCTCAGCTGAGTTGGGTCTACATGTTGCTT 476
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 ACACTCAGTTGTTCAGGTTCTCATTTGACCCCTCAGCTGAATTGGGTCTACATGTTGCTT 360
Query 477 CTTGTCTCCTGACAAGGGCTCCTTTAGGCTATAATGCTGAAGGGAAAACGAAATATGTCA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTTGTCTCCTGACAAGGGCTCCTTTAGGCTATAATGCTGAAGGGAAAACGAAATATGTCA 420
Query 537 TTAGACCTTACACTCCTATATCAGATCCAGAGGCTAAGGGCTATTTTGATTTACTGATTA 596
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 421 TTAGACCTTACACTCCTATATCAGACCCAAAGGCTAAGGGCTATTTTGATTTACTGATTA 480
Query 597 AGGTATATCCTGACGGAAAAATGAGTCAGCATTTTGCCAGCTTAAAACCGGGGGATGTGT 656
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGGTATATCCAGACGGAAAAATGAGTCAGCATTTTGCCAGCTTAAAACCGGGGGATGTGT 540
Query 657 TGGAAGTAAAAGGACCCGTTGAAAAGTTCAAATACTCGCCGAATATGAAGAAACATATTG 716
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TGGAAGTAAAAGGACCCGTTGAAAAGTTCAAATATTCGCCGAATATGAAGAAACATATTG 600
Query 717 GCATGATTGCCGGTGGAAGTGGGATTACTCCAATGCTTCAGGTGATTGATGCCATTGTGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCATGATTGCCGGTGGAAGTGGGATTACTCCAATGCTTCAGGTGATTGATGCCATTGTGA 660
Query 777 AGAATCCTGAGGACAACACGCAGATATCATTGCTTTATGCCAATGTGTCACCAGATGATA 836
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 661 AGAATCCCGAGGACAACACGCAGATATCATTGCTTTATGCCAATGTTTCTCCAGATGATA 720
Query 837 TACTCCTGAAGCAGAAGCTTGATGTACTTCAGGCTAACCACCCAAATTTGAAGATATTCT 896
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 721 TACTTCTGAAGCAGAAGCTTGATGTTCTTCAGGCTAACCACCCAAATTTGAAGATATTCT 780
Query 897 ATACTGTTGACAACCCTACTAAAAACTGGAAAGGAGGAGTAGGTTACATTTCAAAGGATA 956
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATACTGTTGACAATCCTACTAAAAACTGGAAAGGAGGAGTAGGTTACATTTCAAAGGATA 840
Query 957 TGGCTCTGAAAGGCTTACCTCTTCCTACCGACGATACTCTTATCCTTGTATGCGGTCCTC 1016
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 841 TGGCTCTGAAAGGCTTACCTCTTCCTACGGATGATACTCTTATCCTTGTATGTGGTCCTC 900
Query 1017 CTGGGATGATGGAGCATATATCTGGAGGCAAAGCTCCAGACTGGTCACAAGGAGAGGTCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CTGGGATGATGGAGCATATATCTGGAGGCAAAGCTCCAGACTGGTCACAAGGAGAGGTCA 960
Query 1077 AGGGGATTCTCAAGGAACTCGGATACACAGAGGAAATGGTGTTCAAATTCTGAGTGGACT 1136
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||
Sbjct 961 AGGGGATACTCAAGGAACTCGGATACACAGAGCAAATGGTGTTCAAATTCTGAGAGTACT 1020
Query 1137 A 1137
|
Sbjct 1021 A 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5