BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20090.1
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488911 jgi|Araly1|488911|fgenesh2_kg.6__2045__AT5G20090.1 1029 0.0
> Ahg488911 jgi|Araly1|488911|fgenesh2_kg.6__2045__AT5G20090.1
Length=683
Score = 1029 bits (557), Expect = 0.0
Identities = 651/693 (94%), Gaps = 20/693 (3%)
Strand=Plus/Plus
Query 1 AAACCCATTTAGCTTTTGACTTGTGTTGTTCTTCGTC-GCTCTGTC-T--TAATATTCCC 56
||||||||||||||||||||||||| || || || || || ||||| | ||||||||||
Sbjct 1 AAACCCATTTAGCTTTTGACTTGTG-TGCTC-TC-TCTGC-CTGTCTTAATAATATTCCC 56
Query 57 TCACCAACTCGTTTCATTTG-GGGAC-AAGCTTCTTCGATTTTCCTCTCAGACCAATCGG 114
||| ||||||||||| |||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 57 TCAACAACTCGTTTCGTTTGTGGG-CAAAGCTTCTTCGATTTTCCTCTCAGACCAATCGG 115
Query 115 GCTTTCGAATCCCATCA-G-TAGAAATGGCTACATCAAGGTTCCAAGCATTCTTGAACAG 172
| ||||| || | ||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 116 G-TTTCGCAT-CGGTCAGGTTAGATATGGCTACATCAAGGTTCCAAGCATTCTTGAACAG 173
Query 173 TCCCA-TTGGCCCAAAAACAACTCATTTCTGGGGGCCTATCGCTAATTGGGGTTTTGTTG 231
| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 T-CCAGTCGGCCCTAAAACAACTCATTTCTGGGGGCCTATCGCTAATTGGGGTTTTGTTG 232
Query 232 CTGCTGGTTTGGTGGATATGCAAAAGCCCCCTGAAATGATTTCTGGAAACATGTCGTCAG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 233 CTGCTGGTTTGGTGGATATGCAAAAGCCCCCTGAAATGATTTCTGGAAACATGTCCTCAG 292
Query 292 CTATGTGCGTTTACTCTGCATTGTTCATGAGGTTTGCCTGGATGGTGCAACCACGTAACT 351
||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 293 CTATGTGCGTTTACTCTGCATTGTTCATGAGATTTGCCTGGATGGTGCAACCGCGCAACT 352
Query 352 ATTTGCTACTTGCGTGCCATGCATCAAACGAGACTGTACAACTCTATCAGCTCTCACGTT 411
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 ATCTGCTACTTGCGTGCCATGCATCAAACGAGACTGTACAACTCTATCAGCTCTCACGTT 412
Query 412 GGGCTAGAGCCCAGGGGTATTTATCCTCCAAGAAAGAAGAGGAGAAACCATCTCAGTAAA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGGCTAGAGCCCAGGGGTATTTATCCTCCAAGAAAGAAGAGGAGAAACCATCTCAGTAAA 472
Query 472 CCAAAATGAGGAAAGGTTTCTTC-AACGCTGCTTCAGAATTTGTTCGTGGGAATTACTGA 530
||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct 473 CCAAAATGAGGAAAGGTTTCTTCGAA-GCTGCTTCAGAATTTGTTCTTGGGAATTACTGA 531
Query 531 ATCCATCCATTTGATTTTCTTTCGAAACGTGTTTTGTATTGTGTCCCCAAGCTATGGTTG 590
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 532 ATCCATCCATTTGATTTTCTTTTGAAACGTGTTT-GTATTGTGTCCCCAAGCTATGGTTG 590
Query 591 CTTTACTTGTTGGATCATTCACTAACATTATATCCTTTGTTTTCATAAGTAACCGCTTGT 650
|||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||||
Sbjct 591 CTTTACTTGTTGGATCGTTCACTAACATTATCTCTTTTGTTTTTATAAGTAACCGCTTGT 650
Query 651 AATAAAATTTGGGACCAGTCGTCATTCCACATT 683
||||||||||||||||||||| || ||||||||
Sbjct 651 AATAAAATTTGGGACCAGTCGCCAGTCCACATT 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26266689813
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5