BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G20100.1

Length=670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg351105 jgi|Araly1|351105|fgenesh1_pg.C_scaffold_6001698           525    2e-148


> Ahg351105 jgi|Araly1|351105|fgenesh1_pg.C_scaffold_6001698
Length=531

 Score =  525 bits (284),  Expect = 2e-148
 Identities = 318/335 (95%), Gaps = 0/335 (0%)
 Strand=Plus/Plus

Query  98   ATGGCGTTGCAGAGATCAACAGCGTCGTTTAGGAGACAAGGATCGTCAGGACTCATCTGG  157
            |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCGTTACAGAGATCAACGGCGTCTTTTAGGAGACAAGGATCGTCAGGACTCATCTGG  60

Query  158  AACGACAGGTTCTTGAGCGGAGAAATTCGCAACGACGAAAGACAAGAAGACCGGTGCAAC  217
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AACGACAGGTTCTTGAGCGGAGAAATTCGCAATGACGAAAGACAAGAAGACCGGTGCAAC  120

Query  218  GATCATCGTGACGGATCAATGGCTGCTACGACTGCAACAGTGAAACGTAGCGCATCAGAC  277
            ||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||
Sbjct  121  GATCATCGTGACGGATCAATGGCGGCTACGGCGGCGACAGTGAAACGTAGCGCATCAGAC  180

Query  278  GGAGGATGTGGCCATGGTGGAAGATTGGGGGAGCTATCTCCAGCGTTGGATCCACCTTCA  337
            |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| 
Sbjct  181  GGAGGATGTGGCCATGGTGGAATATTGGGGGAGATATCTCCAGCGTTGGATCCACCTTCT  240

Query  338  CCTAAAATATCTGCCGTTGGTTGTGGCTTTTGTTCTTTGTTTTCGTCTAATGGGAAAAGA  397
            |||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| ||||
Sbjct  241  CCTAAAATATCTTCCGTTGGTTGTGGCTTTTGTTCTCTGTTTTCGTCTGATAGGAGAAGA  300

Query  398  AGAAGCAGAGGCAGGAGAAGATCAAGCGGTGGAAG  432
            ||||||||||| |||||||||||||||||||||||
Sbjct  301  AGAAGCAGAGGAAGGAGAAGATCAAGCGGTGGAAG  335


 Score =  231 bits (125),  Expect = 4e-60
 Identities = 148/158 (94%), Gaps = 6/158 (4%)
 Strand=Plus/Plus

Query  498  GATTTGATTATGTTCTTCTCTCTTTATGT-AAAAATTTCGAAATCTTGATGGATAAAGCC  556
            |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| 
Sbjct  335  GATTTGATTATGTTCTTCTCTCTT-ATGTGAAAAATTTCGAAACCTTGATGGATAAAGC-  392

Query  557  TA-GGAATGGCTTTTGGTTTCAAGAGAAGGCTTATTTATAGATTGATCCTTACGAAAATG  615
            || ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  393  TAAGGA-TGGCTTTTGGTTTCAAGAGAAGGCTTATT-ATAGATTGATCCTTACAAAAATG  450

Query  616  TGTTTGTTTGTTTGTTTTCATCGATTTATCAATCAAGT  653
            ||||||||||| |||| |||||||||||||||||||||
Sbjct  451  TGTTTGTTTGTGTGTTCTCATCGATTTATCAATCAAGT  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24589281465


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5