BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20110.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488913 jgi|Araly1|488913|fgenesh2_kg.6__2047__AT5G20110.1 1221 0.0
> Ahg488913 jgi|Araly1|488913|fgenesh2_kg.6__2047__AT5G20110.1
Length=772
Score = 1221 bits (661), Expect = 0.0
Identities = 743/781 (95%), Gaps = 12/781 (2%)
Strand=Plus/Plus
Query 1 ACTCATTTCTGTCTCTGACTCTTCCGTATAAATAACGCATATGAGCCACTAAAGAGTTTC 60
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ACTCATTTCTGTCTATGACTCTTCGGTATAAATAACGCATATGAGCCACTAAAGAGTTTC 60
Query 61 CACAAATATTATTACg-aaaaaataacaaaaacaatgaatgaagagagacccaaaaagtc 119
|||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||
Sbjct 61 CACAAATATTTTTACGCAAAAAATAAC--AAA-AATGAATGAAGAGAGACCCAAAAAGTC 117
Query 120 gaagaagaaaagTCTCATGAACTTCTACAAATTCTCAATCACTTCGTCGAAACACTCACT 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 118 GAAGAAGAAAAGTCTCATGAACTTCTACAAATTCTCCATCACTTCGTCGAAACACTCACT 177
Query 180 CATAAACCCTAAATCCAAACCAAAGATCCCGATCAGTACACCATCAATATCTCAACAAGA 239
||||||||||||||||||||||| ||||||||| || |||||||||| |||| ||||
Sbjct 178 TATAAACCCTAAATCCAAACCAAAAATCCCGATC---ACGCCATCAATATGTCAAGAAGA 234
Query 240 AGTAGAAGAAAAACCAATCGTCCAGTCGAATAAAAGTCATCAAAACCATGTGATGAGGGA 299
|||||||||||||||||||||||| || ||||||| || ||||||||||||||||| ||
Sbjct 235 AGTAGAAGAAAAACCAATCGTCCAATCAAATAAAA--CA-CAAAACCATGTGATGAGAGA 291
Query 300 TATATTCGAGTTAGAGACTACTTGTAGTAGAAATAATGAAAGAAAGAAAGGCGGTGGCGC 359
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 292 CATCTTCGAGTTAGAGACTACTTGTAGTAGAAATAATGAAAGAAAGAAAGGCGGTGGTGC 351
Query 360 GGCGGAGGAGGGGAGAAAATCGGTGTCTCACGTGGAGAGGGATACGGCGGCGAGGATAGA 419
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 352 GGCGGAGGAGGGGAGGAAATCGGTGTCTCACGTGGAGAGGAATACGACGGCGAGGATAGA 411
Query 420 GGCAGCGGCGGAGATGTTGACGGTGAGGATACTAGCTGCGGACATGCCGGGGTTTATGCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 412 GGCAGCGGCGGAGATGTTGACGGTGAGGATACTAGCTGCGGACATGCCGGGATTTATGCA 471
Query 480 GGCACATGCGTTTAGGTGTGCGAGAATGACTTTAGATAGTTTGGAGAAGTTTAGTTCGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GGCACATGCGTTTAGGTGTGCGAGAATGACTTTAGATAGTTTGGAGAAGTTTAGTTCGAA 531
Query 540 GCACATGGCTTTCAATCTCAAGAAGGAGTTTGACAAAGGGTATGGACCAGCATGGCATTG 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 532 GCACATGGCTTTCAATCTCAAGAAGGAATTTGACAAAGGGTATGGACCAGCATGGCATTG 591
Query 600 CATAGTGGGATCAAGTTTCGGGTCGTTTGTGACACATTCGACAGGTTGTTTTATTTATTT 659
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 592 CATAGTGGGATCAAGTTTCGGGTCCTTCGTGACACATTCGACAGGTTGTTTTATTTATTT 651
Query 660 CTCAATGGACAAACTCTACGTTCTCCTCTTCAAAACCAAAGTTCGTCCTGCTTCTCCCCA 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CTCAATGGACAAACTCTACATTCTCCTCTTCAAAACCAAAGTTCGTCCTGCTTCTCCCCA 711
Query 720 TTGATTTTCTT-CTTTAGGTTGTAACAA-CTTATACCAATGGTAATCAAAAGGCTTACTG 777
|||||||| || |||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 712 TTGATTTTGTTTCTTTAGGTTGTAACAAACTTATACCAATCGTAATCAAAAGGCATACTG 771
Query 778 T 778
|
Sbjct 772 T 772
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5