BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G20120.1 Length=1195 Score E Sequences producing significant alignments: (Bits) Value Ahg941565 jgi|Araly1|941565|scaffold_602109.1 1013 0.0 > Ahg941565 jgi|Araly1|941565|scaffold_602109.1 Length=609 Score = 1013 bits (548), Expect = 0.0 Identities = 587/606 (97%), Gaps = 2/606 (0%) Strand=Plus/Plus Query 361 TTTTAGCTTCTAGGAACATGTCTGGTGGAACTCCAGTTGGTGGTGGTGGGTACATTAGGC 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5 TTTTAGCTTCTAGGAACATGTCTGGTGGAACTCCAGTTGGTGGTGGTGGGTACATTAGGC 64 Query 421 AAAGACATAGCCAAGGTTATGCTTCTGGTGGTGATGATCTTGAGGATGATGCTTGCTCTA 480 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 65 AAAGACATAGCCAAGGTTATGCATCTGGTGGTGATGATCTTGAGGATGATGCTTGCTCTA 124 Query 481 GGCCACAGCCTTTTTCTTTAGAGAATCCTAGAAGTAAAACCTGGGTTGAGATTTTGGAGA 540 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 125 GGCCACAGCCTTTTTCGTTAGAGAATCCTAGAAGTAAAACGTGGGTTGAGATTTTGGAGA 184 Query 541 ATGTGCTTTGGATTGCATCTGCTGTCTTCATTGTCTATTTTGGAGACAGGCACTCTAATA 600 ||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||| Sbjct 185 ATGTGCTTTGGATTGCATCTGCTGTGTTCATTGTCTATTTTGGAGACAGACATTCCAATA 244 Query 601 TGATACATATTCTCTTACGTGATGCTCGGATCAAAAGGATGCCTTTGTATTTCGGGATGT 660 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 245 TGATACATATCCTCTTACACGATGCTCGGATCAAAAGGATGCCTTTGTATTTCGGGATGT 304 Query 661 TGGGAATAGCTGTGAACATTATAATCATAATCTACGAAAGCATGTTATCTTGGAGCATGA 720 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 305 TGGGAATAGCTGTGAACATTATAATCATAATCTACGAAAGCATGTTATCGTGGAGCATGA 364 Query 721 GAAGGTTTGATGAGAAATGGGAACTGTGGAGTATCTCTGCTCTGCCTTTCATCACCCTAC 780 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 365 GAAGGTTTGATGAGAAATGGGAACTGTGGAGTATCTCAGCTCTGCCTTTCATCACCCTGC 424 Query 781 TCGGCATCATTTCATTTGGCCTGCTCTCCTTTGCTCTGTGGCCTATATGGGGCTTCTTGA 840 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 425 TCGGCCTCATTTCATTTGGCCTGCTCTCCTTTGCTCTGTGGCCTATATGGGGCTTCTTGA 484 Query 841 CTCTCCCCCTTCTGTTCACATTGTTCATGGCATGCCTTGTTGTGTTCCCACATCTCATGA 900 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 485 CTCTCCCCCTTCTGTTCACATTGTTCATGGCTTGCCTTGTTGTGTTCCCGCATCTCATGA 544 Query 901 TCATCAAATTCAGGCCTCAAAACGACGAACTCCGCATAGATTGATCTGTAGAGAA-TGGA 959 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || | Sbjct 545 TCATCAAATTCAGGCCTCAAAACGACGAACTCCGCATAGATTGATATGTAGAGAACTG-A 603 Query 960 GATAGT 965 |||||| Sbjct 604 GATAGT 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44603812890 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5