BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20120.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941565 jgi|Araly1|941565|scaffold_602109.1 1013 0.0
> Ahg941565 jgi|Araly1|941565|scaffold_602109.1
Length=609
Score = 1013 bits (548), Expect = 0.0
Identities = 587/606 (97%), Gaps = 2/606 (0%)
Strand=Plus/Plus
Query 361 TTTTAGCTTCTAGGAACATGTCTGGTGGAACTCCAGTTGGTGGTGGTGGGTACATTAGGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5 TTTTAGCTTCTAGGAACATGTCTGGTGGAACTCCAGTTGGTGGTGGTGGGTACATTAGGC 64
Query 421 AAAGACATAGCCAAGGTTATGCTTCTGGTGGTGATGATCTTGAGGATGATGCTTGCTCTA 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 65 AAAGACATAGCCAAGGTTATGCATCTGGTGGTGATGATCTTGAGGATGATGCTTGCTCTA 124
Query 481 GGCCACAGCCTTTTTCTTTAGAGAATCCTAGAAGTAAAACCTGGGTTGAGATTTTGGAGA 540
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 125 GGCCACAGCCTTTTTCGTTAGAGAATCCTAGAAGTAAAACGTGGGTTGAGATTTTGGAGA 184
Query 541 ATGTGCTTTGGATTGCATCTGCTGTCTTCATTGTCTATTTTGGAGACAGGCACTCTAATA 600
||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 185 ATGTGCTTTGGATTGCATCTGCTGTGTTCATTGTCTATTTTGGAGACAGACATTCCAATA 244
Query 601 TGATACATATTCTCTTACGTGATGCTCGGATCAAAAGGATGCCTTTGTATTTCGGGATGT 660
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TGATACATATCCTCTTACACGATGCTCGGATCAAAAGGATGCCTTTGTATTTCGGGATGT 304
Query 661 TGGGAATAGCTGTGAACATTATAATCATAATCTACGAAAGCATGTTATCTTGGAGCATGA 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 305 TGGGAATAGCTGTGAACATTATAATCATAATCTACGAAAGCATGTTATCGTGGAGCATGA 364
Query 721 GAAGGTTTGATGAGAAATGGGAACTGTGGAGTATCTCTGCTCTGCCTTTCATCACCCTAC 780
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 365 GAAGGTTTGATGAGAAATGGGAACTGTGGAGTATCTCAGCTCTGCCTTTCATCACCCTGC 424
Query 781 TCGGCATCATTTCATTTGGCCTGCTCTCCTTTGCTCTGTGGCCTATATGGGGCTTCTTGA 840
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TCGGCCTCATTTCATTTGGCCTGCTCTCCTTTGCTCTGTGGCCTATATGGGGCTTCTTGA 484
Query 841 CTCTCCCCCTTCTGTTCACATTGTTCATGGCATGCCTTGTTGTGTTCCCACATCTCATGA 900
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 485 CTCTCCCCCTTCTGTTCACATTGTTCATGGCTTGCCTTGTTGTGTTCCCGCATCTCATGA 544
Query 901 TCATCAAATTCAGGCCTCAAAACGACGAACTCCGCATAGATTGATCTGTAGAGAA-TGGA 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 545 TCATCAAATTCAGGCCTCAAAACGACGAACTCCGCATAGATTGATATGTAGAGAACTG-A 603
Query 960 GATAGT 965
||||||
Sbjct 604 GATAGT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5