BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G20130.1
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488915 jgi|Araly1|488915|fgenesh2_kg.6__2049__AT5G20130.1 1118 0.0
> Ahg488915 jgi|Araly1|488915|fgenesh2_kg.6__2049__AT5G20130.1
Length=791
Score = 1118 bits (605), Expect = 0.0
Identities = 744/806 (92%), Gaps = 29/806 (4%)
Strand=Plus/Plus
Query 12 ATTGTGGTGGGATAAGGGAGAGGAAGAGAGAGCGATGGGACACGTAACGAGGCTATTGAT 71
||||||||||||||||||||| | || ||| |||||||||||||| |||||| ||||
Sbjct 1 ATTGTGGTGGGATAAGGGAGA-G--GATAGA--GATGGGACACGTAATGAGGCTGCTGAT 55
Query 72 AAACCCTTCGTC-T--TCCTCGCCACTTCTCCACCTCCGTTGTTGCCACCGGACTCTTGA 128
||||||||| || | |||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 56 AAACCCTTCTTCTTCCTCCTCGCCTCTTCTCCACCTCCGTTGTTCCCACCGGACTCTTGA 115
Query 129 CCCTAACTCTGTCTTCTCTCTTCGAACCTCAATCACCAAAAGCAAGGGACGATTCTCTTG 188
||| |||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 116 CCCCAACTCTGTCTTCTCTCTTCGAACCGCAATTACCAAAAGCAAGGCACGATTCTCTTG 175
Query 189 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCTTTTCTCCGGCGGCAACCAGAGAGAGGAGCAAGCTCGTAAATCATTGGAAAGCGCTCT 235
Query 249 TGGTGGGAAGAAGAATGAGTTTGAGAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 308
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 236 TGGTGGGAAGAAAAATGAGTTTGACAAGTGGGACAAAGAGATCAAGAAAAGAGAAGAATC 295
Query 309 Cggtggcggaaatggtggtaaaggtggaggaggaggaggttggtttggaggtggtggttg 368
|||||||||||| |||| | ||||||||||||| |||||||||||||| |||||
Sbjct 296 CGGTGGCGGAAA---TGGT--A----GAGGAGGAGGAGGCTGGTTTGGAGGTGGCGGTTG 346
Query 369 gttTAGTGGCGACCATTTCTGGAAAGAGGCACAACAGATTGCCTTTACCCTCTTAGCAAT 428
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 347 GTTCAGTGGCGACCATTTCTGGAATGAAGCACAACAGATTGCCTTTACCCTCTTAGCAAT 406
Query 429 ACTTGCCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 488
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 ACTAGTCGTGTATATGGTGGTTGCGAAAGGTGAAGTCATGGCTGCATTTGTGTTAAACCC 466
Query 489 GTTGTTGTATGCGTTGCGAGGAACACGGGAAGGTTTGTCTTCTCTAAGCTCCAAACTCAT 548
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 467 GTTGTTGTATGCGTTGCGAGGAACACGAGAAGGTTTGACTTCTCTAAGCTCCAAACTCAT 526
Query 549 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAAGAAGGAAGG 608
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 527 GGGAAGAGAAGCTTCCAAAGTGAGTGGTGACAACTCAGAGGAGATGTGGAACAAGGAAGG 586
Query 609 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACACAATTCTTAA 668
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 587 TTCCACTGCTAAAGAGAGCGTTGTCCGGAAATGGGGAAGTGACTGAAACAAAATTCTTTA 646
Query 669 AGCTGACTCAAGAAGAA--TG-ACTTTGGGTGTTTTTGTAACATCAAGA-TGA-GAT-A- 721
||| ||||||||||||| | | |||| || ||||||||||||| ||| | | ||| |
Sbjct 647 AGCCGACTCAAGAAGAAAATATA-TTTGAGTTTTTTTGTAACATCGAGAATCATGATGAG 705
Query 722 AT-A--TGCAATCGACCTTTTCAGTTTTGTAATGGAGGATAGGTATT-TTCTGTGAACAA 777
|| | |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||
Sbjct 706 ATCAAATGCAATCGACCTTTTCAGATTTGTAATGGAGTATAGGTATTCTTCTGTGAACAA 765
Query 778 GAAAGAGTGACTCTGTTTGTAACTTC 803
||||||||||||||||||||||||||
Sbjct 766 GAAAGAGTGACTCTGTTTGTAACTTC 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31565775276
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5